JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HDDC3_chr15_90924968_90937549	0/0	t0009	1317	2	2	0	0	0	0	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	t0010	1317	1	0	0	0	0	1	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	t0011	1317	1	0	0	0	0	1	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	t0012	1317	1	0	0	1	0	0	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	t0013	1317	1	0	0	0	0	1	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	t0014	1317	1	1	0	0	0	0	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	t0015	1317	1	1	0	0	0	0	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	t0016	1317	1	1	0	0	0	0	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	t0017	1317	1	0	0	1	0	0	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	t0018	1317	1	1	0	0	0	0	copy fasta	HDDC3	chr15	90924968	90937549
HDGFL1_chr6_22564566_22576666	1/0	t0001	1346	288	51	46	150	12	28	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	t0002	1345	45	1	2	39	0	3	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/1	t0003	1346	33	8	14	0	3	7	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	t0004	1346	18	14	4	0	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	t0005	1346	11	1	5	0	2	3	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	t0006	1346	9	6	3	0	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	t0007	1343	5	5	0	0	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	t0008	1344	3	3	0	0	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	t0009	1346	3	0	2	1	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	t0010	1346	2	0	2	0	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	t0011	1347	2	0	1	1	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	t0012	1346	1	1	0	0	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	t0013	1346	1	0	0	1	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	t0014	1346	1	0	0	0	0	1	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	t0015	1346	1	0	0	1	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	t0016	1346	1	1	0	0	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	t0017	1346	1	0	0	1	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	t0018	1347	1	0	1	0	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	t0019	1345	1	0	0	1	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	t0020	1346	1	0	0	1	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	t0021	1346	1	0	0	0	1	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	t0022	1346	1	1	0	0	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	t0023	1346	1	1	0	0	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	t0024	1346	1	1	0	0	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL2_chr19_4467297_4507207	0/0	t0001	252	125	26	39	41	5	14	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	1/1	t0002	252	123	11	24	64	5	17	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	t0003	252	58	21	3	16	6	12	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	t0004	252	19	9	6	0	1	3	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	t0005	252	11	11	0	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	t0006	252	6	5	1	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	t0007	252	5	0	0	5	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	t0008	252	4	4	0	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	t0009	252	2	1	1	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	t0010	252	1	1	0	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	t0011	252	1	1	0	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	t0012	252	1	0	0	0	1	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	t0013	252	1	1	0	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	t0014	252	1	1	0	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL3_chr15_83122753_83212823	1/0	t0001	11927	74	20	18	27	2	6	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/1	t0002	11934	27	10	10	0	2	4	copy fasta	HDGFL3	chr15	83122753	83212823