JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HDGFL3_chr15_83122753_83212823	0/0	t0003	11934	21	0	0	21	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0004	11931	18	12	4	0	1	1	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0005	11931	12	12	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0006	11927	8	0	6	0	1	1	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0007	11927	7	0	4	3	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0008	11939	5	4	1	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0009	11937	4	0	0	0	0	4	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0010	11927	4	0	0	4	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0011	11931	4	4	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0012	11931	3	3	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0013	11933	3	3	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0014	11930	3	3	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0015	11928	3	1	2	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0016	11930	2	1	0	1	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0017	11927	2	0	1	1	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0018	11931	2	1	1	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0019	11927	1	0	0	1	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0020	11943	1	1	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0021	11939	1	0	1	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0022	11937	1	1	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0023	11937	1	1	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0024	11934	1	0	0	1	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0025	11934	1	1	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0026	11934	1	1	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0027	11934	1	0	0	0	0	1	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0028	11933	1	1	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0029	11934	1	1	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0030	11933	1	1	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0031	11931	1	0	0	1	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0032	11927	1	0	0	1	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0033	11931	1	1	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0034	11927	1	0	0	1	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0035	11931	1	1	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0036	11931	1	1	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0037	11927	1	1	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0038	11927	1	0	0	1	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0039	11927	1	0	0	1	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0040	11927	1	1	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0041	11927	1	0	0	1	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0042	11927	1	0	0	1	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0043	11927	1	0	0	1	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0044	11927	1	0	0	0	0	1	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0045	11927	1	0	0	0	0	1	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0046	11927	1	0	0	1	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0047	11927	1	0	1	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0048	11927	1	0	0	0	0	1	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0049	11927	1	0	0	1	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0050	11927	1	0	1	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0051	11931	1	0	1	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0052	11927	1	0	0	1	0	0	copy fasta	HDGFL3	chr15	83122753	83212823