JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HDGFL3_chr15_83122753_83212823	0/0	t0053	11931	1	1	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0054	11931	1	1	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0055	11931	1	1	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0056	11921	1	1	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0057	11927	1	0	0	0	0	1	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0058	11931	1	1	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0059	11927	1	0	0	0	0	1	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0060	11927	1	0	1	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0061	11931	1	1	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGFL3_chr15_83122753_83212823	0/0	t0062	11930	1	1	0	0	0	0	copy fasta	HDGFL3	chr15	83122753	83212823
HDGF_chr1_156737109_156756675	1/1	t0001	1587	319	80	72	108	15	42	copy fasta	HDGF	chr1	156737109	156756675
HDGF_chr1_156737109_156756675	0/0	t0002	1587	11	7	2	0	1	1	copy fasta	HDGF	chr1	156737109	156756675
HDGF_chr1_156737109_156756675	0/0	t0003	1588	7	4	1	0	0	2	copy fasta	HDGF	chr1	156737109	156756675
HDGF_chr1_156737109_156756675	0/0	t0004	1587	1	0	0	0	0	1	copy fasta	HDGF	chr1	156737109	156756675
HDGF_chr1_156737109_156756675	0/0	t0005	1587	1	0	0	1	0	0	copy fasta	HDGF	chr1	156737109	156756675
HDGF_chr1_156737109_156756675	0/0	t0006	1587	1	0	0	1	0	0	copy fasta	HDGF	chr1	156737109	156756675
HDGF_chr1_156737109_156756675	0/0	t0007	1587	1	1	0	0	0	0	copy fasta	HDGF	chr1	156737109	156756675
HDGF_chr1_156737109_156756675	0/0	t0008	1588	1	0	1	0	0	0	copy fasta	HDGF	chr1	156737109	156756675
HDHD2_chr18_47102410_47155500	0/1	t0001	1406	282	52	60	131	10	28	copy fasta	HDHD2	chr18	47102410	47155500
HDHD2_chr18_47102410_47155500	0/0	t0002	1406	53	3	7	40	2	1	copy fasta	HDHD2	chr18	47102410	47155500
HDHD2_chr18_47102410_47155500	0/0	t0003	1406	4	4	0	0	0	0	copy fasta	HDHD2	chr18	47102410	47155500
HDHD2_chr18_47102410_47155500	1/0	t0004	1406	4	3	0	0	0	0	copy fasta	HDHD2	chr18	47102410	47155500
HDHD2_chr18_47102410_47155500	0/0	t0005	1406	3	0	1	0	1	1	copy fasta	HDHD2	chr18	47102410	47155500
HDHD2_chr18_47102410_47155500	0/0	t0006	1406	3	1	1	0	1	0	copy fasta	HDHD2	chr18	47102410	47155500
HDHD2_chr18_47102410_47155500	0/0	t0007	1406	3	2	1	0	0	0	copy fasta	HDHD2	chr18	47102410	47155500
HDHD2_chr18_47102410_47155500	0/0	t0008	1406	2	2	0	0	0	0	copy fasta	HDHD2	chr18	47102410	47155500
HDHD2_chr18_47102410_47155500	0/0	t0009	1406	2	2	0	0	0	0	copy fasta	HDHD2	chr18	47102410	47155500
HDHD2_chr18_47102410_47155500	0/0	t0010	1406	2	2	0	0	0	0	copy fasta	HDHD2	chr18	47102410	47155500
HDHD2_chr18_47102410_47155500	0/0	t0011	1406	1	1	0	0	0	0	copy fasta	HDHD2	chr18	47102410	47155500
HDHD2_chr18_47102410_47155500	0/0	t0012	1406	1	1	0	0	0	0	copy fasta	HDHD2	chr18	47102410	47155500
HDHD2_chr18_47102410_47155500	0/0	t0013	1406	1	1	0	0	0	0	copy fasta	HDHD2	chr18	47102410	47155500
HDHD2_chr18_47102410_47155500	0/0	t0014	1406	1	0	0	1	0	0	copy fasta	HDHD2	chr18	47102410	47155500
HDHD2_chr18_47102410_47155500	0/0	t0015	1406	1	0	0	0	0	1	copy fasta	HDHD2	chr18	47102410	47155500
HDHD2_chr18_47102410_47155500	0/0	t0016	1406	1	0	0	1	0	0	copy fasta	HDHD2	chr18	47102410	47155500
HDHD2_chr18_47102410_47155500	0/0	t0017	1406	1	0	0	1	0	0	copy fasta	HDHD2	chr18	47102410	47155500
HDHD2_chr18_47102410_47155500	0/0	t0018	1406	1	0	0	0	0	1	copy fasta	HDHD2	chr18	47102410	47155500
HDHD3_chr9_113368422_113381986	1/1	t0001	726	208	29	48	85	13	31	copy fasta	HDHD3	chr9	113368422	113381986
HDHD3_chr9_113368422_113381986	0/0	t0002	726	128	24	23	71	3	7	copy fasta	HDHD3	chr9	113368422	113381986
HDHD3_chr9_113368422_113381986	0/0	t0003	726	86	27	9	46	1	3	copy fasta	HDHD3	chr9	113368422	113381986
HDHD3_chr9_113368422_113381986	0/0	t0004	726	12	3	2	7	0	0	copy fasta	HDHD3	chr9	113368422	113381986
HDHD3_chr9_113368422_113381986	0/0	t0005	726	7	4	2	0	1	0	copy fasta	HDHD3	chr9	113368422	113381986
HDHD3_chr9_113368422_113381986	0/0	t0006	726	6	0	0	6	0	0	copy fasta	HDHD3	chr9	113368422	113381986
HDHD3_chr9_113368422_113381986	0/0	t0007	726	5	5	0	0	0	0	copy fasta	HDHD3	chr9	113368422	113381986
HDHD3_chr9_113368422_113381986	0/0	t0008	726	4	4	0	0	0	0	copy fasta	HDHD3	chr9	113368422	113381986
HDHD3_chr9_113368422_113381986	0/0	t0009	726	2	0	0	2	0	0	copy fasta	HDHD3	chr9	113368422	113381986
HDHD3_chr9_113368422_113381986	0/0	t0010	726	2	1	1	0	0	0	copy fasta	HDHD3	chr9	113368422	113381986
HDHD3_chr9_113368422_113381986	0/0	t0011	726	1	0	1	0	0	0	copy fasta	HDHD3	chr9	113368422	113381986
HDHD3_chr9_113368422_113381986	0/0	t0012	726	1	0	0	1	0	0	copy fasta	HDHD3	chr9	113368422	113381986
HDHD3_chr9_113368422_113381986	0/0	t0013	726	1	0	0	0	0	1	copy fasta	HDHD3	chr9	113368422	113381986
HDHD3_chr9_113368422_113381986	0/0	t0014	726	1	1	0	0	0	0	copy fasta	HDHD3	chr9	113368422	113381986