JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HDHD5_chr22_17132520_17164277	1/1	t0001	528	414	89	73	187	15	48	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	t0002	528	4	4	0	0	0	0	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	t0003	528	2	0	1	0	1	0	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	t0004	528	1	1	0	0	0	0	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	t0005	528	1	0	0	1	0	0	copy fasta	HDHD5	chr22	17132520	17164277
HDLBP_chr2_241222291_241320672	1/0	t0001	2516	79	15	26	13	8	16	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0002	2516	76	13	9	42	2	10	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/1	t0003	2516	32	4	5	14	1	7	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0004	2516	31	0	12	19	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0005	2516	22	1	1	14	1	5	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0006	2515	16	14	2	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0007	2516	13	0	1	9	0	3	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0008	2516	12	12	0	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0009	2516	11	0	0	9	2	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0010	2516	8	5	3	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0011	2516	7	0	0	7	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0012	2516	6	0	0	6	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0013	2516	5	5	0	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0014	2514	4	1	3	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0015	2516	4	3	1	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0016	2516	4	4	0	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0017	2514	3	0	0	3	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0018	2516	2	0	2	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0019	2516	2	0	0	0	0	2	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0020	2515	1	1	0	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0021	2516	1	1	0	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0022	2516	1	1	0	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0023	2516	1	0	1	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0024	2516	1	1	0	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0025	2516	1	0	0	1	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0026	2516	1	1	0	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0027	2516	1	0	1	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0028	2516	1	0	1	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0029	2516	1	0	0	1	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0030	2516	1	1	0	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0031	2514	1	0	0	1	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0032	2516	1	0	0	0	0	1	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0033	2516	1	0	0	1	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0034	2516	1	0	0	1	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0035	2516	1	0	0	1	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	t0036	2516	1	1	0	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDX_chrX_84312878_84507453	1/1	t0001	4233	219	55	37	100	7	18	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	t0002	4233	33	0	3	23	0	7	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	t0003	4233	7	5	2	0	0	0	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	t0004	4233	1	1	0	0	0	0	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	t0005	4233	1	0	1	0	0	0	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	t0006	4233	1	1	0	0	0	0	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	t0007	4233	1	0	0	1	0	0	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	t0008	4232	1	0	1	0	0	0	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	t0009	4232	1	0	0	0	0	1	copy fasta	HDX	chrX	84312878	84507453