Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANGEL1_chr14_76781009_76817882	0/0	t0005	3275	18	0	0	18	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0006	3274	13	2	1	1	4	5	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0007	3274	12	7	2	3	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0008	3275	9	4	0	2	2	1	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0009	3274	7	6	1	0	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0010	3275	7	6	1	0	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0011	3275	5	4	1	0	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0012	3276	5	1	1	1	0	2	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0013	3270	5	0	0	5	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0014	3275	3	3	0	0	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0015	3275	2	2	0	0	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0016	3271	2	2	0	0	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0017	3275	2	0	0	2	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0018	3275	2	0	1	0	0	1	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0019	3274	1	1	0	0	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0020	3275	1	0	1	0	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0021	3261	1	0	0	1	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0022	3276	1	0	0	1	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0023	3271	1	0	0	1	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0024	3270	1	0	0	1	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0025	3275	1	1	0	0	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0026	3276	1	0	0	0	0	1	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0027	3275	1	1	0	0	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0028	3265	1	0	0	1	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0029	3275	1	0	0	1	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0030	3275	1	1	0	0	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0031	3275	1	0	0	1	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0032	3275	1	0	0	0	0	1	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0033	3275	1	0	1	0	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0034	3275	1	1	0	0	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0035	3275	1	0	1	0	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL2_chr1_212987182_213020867	1/0	t0001	3056	131	10	18	76	6	20	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/1	t0002	3056	109	0	28	70	2	8	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	t0003	3056	60	52	6	0	0	2	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	t0004	3056	55	20	9	20	4	2	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	t0005	3056	10	1	4	4	0	1	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	t0006	3056	4	3	1	0	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	t0007	3056	4	4	0	0	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	t0008	3057	4	3	1	0	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	t0009	3056	2	2	0	0	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	t0010	3056	2	2	0	0	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	t0011	3056	2	0	2	0	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	t0012	3056	2	0	0	2	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	t0013	3056	2	0	2	0	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	t0014	3056	1	0	0	1	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	t0015	3056	1	0	1	0	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	t0016	3066	1	0	0	1	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	t0017	3056	1	0	0	0	0	1	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	t0018	3056	1	1	0	0	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGPT1_chr8_107244482_107502918	1/0	t0001	2734	122	29	25	54	2	11	copy fasta	ANGPT1	chr8	107244482	107502918