JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HDX_chrX_84312878_84507453	0/0	t0010	4233	1	1	0	0	0	0	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	t0011	4233	1	0	1	0	0	0	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	t0012	4233	1	0	0	1	0	0	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	t0013	4233	1	1	0	0	0	0	copy fasta	HDX	chrX	84312878	84507453
HEATR1_chr1_236544005_236609516	0/1	t0001	2025	118	4	21	71	5	16	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	1/0	t0002	2025	80	36	15	17	1	10	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	t0003	2025	58	0	3	43	2	10	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	t0004	2025	47	2	6	37	0	2	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	t0005	2025	22	15	4	0	1	2	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	t0006	2025	22	17	2	0	1	2	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	t0007	2026	18	0	7	9	0	2	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	t0008	2025	10	9	1	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	t0009	2016	3	3	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	t0010	2025	2	2	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	t0011	2025	2	0	0	2	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	t0012	2025	1	0	0	1	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	t0013	2025	1	0	0	1	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	t0014	2025	1	0	0	0	0	1	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	t0015	2025	1	0	0	0	0	1	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	t0016	2025	1	0	1	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	t0017	2026	1	0	0	1	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR3_chr16_50060970_50112272	0/1	t0001	2374	92	28	24	27	5	7	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0002	2375	43	8	4	15	1	15	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0003	2375	27	9	4	11	3	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0004	2375	21	2	1	18	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0005	2374	17	1	2	13	0	1	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0006	2374	15	1	1	13	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0007	2375	13	0	3	8	0	2	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0008	2376	12	3	3	4	0	2	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0009	2376	9	1	1	6	0	1	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0010	2377	7	6	1	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0011	2376	6	6	0	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0012	2375	6	0	1	5	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0013	2376	5	4	1	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0014	2374	4	4	0	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0015	2374	3	0	0	3	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0016	2375	2	2	0	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0017	2374	2	0	2	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0018	2374	2	2	0	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0019	2376	2	0	2	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0020	2377	2	1	0	1	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0021	2375	2	2	0	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0022	2375	2	0	1	0	1	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0023	2374	2	0	2	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0024	2374	1	1	0	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0025	2376	1	0	0	0	0	1	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0026	2375	1	0	0	0	0	1	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0027	2375	1	1	0	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0028	2375	1	1	0	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0029	2376	1	0	0	1	0	0	copy fasta	HEATR3	chr16	50060970	50112272