JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HEATR3_chr16_50060970_50112272	0/0	t0030	2374	1	0	0	0	0	1	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0031	2374	1	0	0	0	0	1	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0032	2374	1	0	0	1	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0033	2374	1	1	0	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0034	2375	1	1	0	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0035	2374	1	0	0	1	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0036	2377	1	0	1	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0037	2375	1	1	0	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0038	2376	1	1	0	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0039	2376	1	0	0	1	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	t0040	2374	1	1	0	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	1/0	t0041	2374	1	0	0	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR4_chr14_73473484_73563947	0/0	t0001	471	100	10	25	52	2	11	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	t0002	392	92	10	17	56	2	7	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	t0003	471	74	26	6	31	4	7	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	1/0	t0004	471	48	8	11	9	4	15	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	t0005	471	26	21	3	1	0	1	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	t0006	471	10	9	1	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	t0007	471	5	0	5	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	t0008	392	3	0	0	3	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	t0009	471	2	2	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	t0010	471	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	t0011	471	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	t0012	471	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	t0013	392	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/1	t0014	471	1	0	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	t0015	471	1	0	0	0	0	1	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	t0016	471	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	t0017	471	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR5A_chr14_31286788_31425550	0/0	t0001	1671	267	29	55	145	8	30	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	t0002	1671	15	14	1	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	t0003	1671	12	12	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	t0004	1672	7	4	0	3	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	t0005	1671	5	0	0	5	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	t0006	1671	5	5	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	t0007	1673	5	3	2	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	t0008	1671	4	4	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	t0009	1671	4	4	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	t0010	1672	3	2	0	0	0	1	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	t0011	1672	3	2	0	0	0	1	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	t0012	1671	3	3	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	t0013	1671	3	0	0	0	0	3	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	t0014	1672	2	0	0	2	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	t0015	1672	2	0	0	2	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	t0016	1671	2	0	2	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	t0017	1667	2	2	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	t0018	1672	2	2	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	t0019	1672	1	0	0	1	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	t0020	1671	1	0	0	1	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	t0021	1671	1	0	0	1	0	0	copy fasta	HEATR5A	chr14	31286788	31425550