JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HEATR5A_chr14_31286788_31425550	0/0	t0022	1666	1	1	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	t0023	1671	1	0	0	0	0	1	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	t0024	1671	1	1	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	t0025	1671	1	1	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	t0026	1671	1	1	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5B_chr2_36975895_37089372	1/1	t0001	722	266	65	52	111	13	23	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	t0002	722	24	2	1	17	0	4	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	t0003	722	10	6	2	0	1	1	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	t0004	722	4	0	0	0	2	2	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	t0005	722	2	2	0	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	t0006	722	1	0	0	1	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	t0007	722	1	1	0	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	t0008	722	1	0	0	1	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	t0009	722	1	0	1	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	t0010	722	1	1	0	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	t0011	722	1	0	0	1	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	t0012	722	1	0	0	1	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	t0013	722	1	1	0	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR6_chr17_60036008_60083921	1/0	t0001	2563	35	0	12	16	1	5	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0002	2120	16	4	8	3	0	1	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0003	2748	15	0	1	14	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0004	2563	14	2	4	6	0	2	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0005	2341	10	8	2	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0006	2452	10	9	1	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0007	2417	9	0	4	4	0	1	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0008	2343	9	5	1	0	2	1	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0009	2343	5	3	1	1	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0010	2417	5	0	0	5	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0011	2378	5	5	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0012	2563	5	0	4	0	1	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/1	t0013	2785	5	0	1	3	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0014	2154	5	5	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0015	2489	4	1	1	0	2	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0016	2452	4	4	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0017	2564	4	4	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0018	2195	4	4	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0019	3004	3	0	0	3	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0020	2452	3	2	1	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0021	2380	3	3	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0022	2380	2	2	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0023	2233	2	2	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0024	2563	2	2	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0025	2489	2	0	0	0	1	1	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0026	2415	2	2	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0027	2563	2	0	1	1	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0028	2636	2	0	1	0	1	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0029	2785	2	0	2	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0030	2489	2	2	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0031	2416	1	1	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0032	2417	1	1	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921