JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HEATR6_chr17_60036008_60083921	0/0	t0083	2489	1	0	0	0	0	1	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0084	2380	1	0	1	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0085	2416	1	1	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0086	2303	1	1	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0087	2380	1	0	1	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0088	2748	1	0	0	1	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	t0089	2343	1	1	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR9_chr17_35849955_35873891	0/1	t0001	258	370	81	68	172	10	38	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	t0002	258	8	0	0	8	0	0	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	t0003	258	1	1	0	0	0	0	copy fasta	HEATR9	chr17	35849955	35873891
HEBP1_chr12_12969870_13005265	0/0	t0001	590	220	33	48	114	6	19	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	0/1	t0002	606	91	8	20	29	10	23	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	0/0	t0003	574	30	4	0	25	0	1	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	1/0	t0004	590	24	19	2	2	0	0	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	0/0	t0005	614	7	4	0	3	0	0	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	0/0	t0006	598	6	6	0	0	0	0	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	0/0	t0007	622	5	0	0	5	0	0	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	0/0	t0008	582	2	2	0	0	0	0	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	0/0	t0009	606	2	2	0	0	0	0	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	0/0	t0010	598	2	1	1	0	0	0	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	0/0	t0011	582	1	1	0	0	0	0	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	0/0	t0012	590	1	0	0	1	0	0	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	0/0	t0013	590	1	0	0	0	0	1	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	0/0	t0014	582	1	0	0	1	0	0	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	0/0	t0015	590	1	0	0	1	0	0	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	0/0	t0016	566	1	0	1	0	0	0	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	0/0	t0017	574	1	0	0	1	0	0	copy fasta	HEBP1	chr12	12969870	13005265
HEBP2_chr6_138399223_138427197	0/1	t0001	9393	88	10	13	51	3	10	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	1/0	t0002	9393	34	11	7	6	2	7	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0003	9393	30	2	14	4	4	6	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0004	9393	21	0	0	21	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0005	9393	8	0	0	8	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0006	9393	7	6	1	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0007	9393	7	6	0	0	1	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0008	9393	6	4	2	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0009	9393	5	0	4	0	1	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0010	9393	5	0	5	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0011	9393	5	5	0	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0012	9389	4	0	0	4	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0013	9390	4	0	3	0	0	1	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0014	9393	4	4	0	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0015	9387	4	0	3	0	0	1	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0016	9393	3	0	0	0	0	3	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0017	9393	3	1	0	2	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0018	9393	3	3	0	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0019	9388	3	3	0	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0020	9393	2	0	2	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0021	9393	2	0	0	2	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0022	9393	2	2	0	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0023	9392	2	1	1	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197