JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HEBP2_chr6_138399223_138427197	0/0	t0074	9392	1	0	0	0	0	1	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0075	9387	1	0	1	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0076	9392	1	0	0	0	0	1	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0077	9393	1	0	1	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0078	9393	1	1	0	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0079	9393	1	1	0	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0080	9392	1	1	0	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0081	9393	1	1	0	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0082	9393	1	0	1	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	t0083	9393	1	1	0	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HECA_chr6_139130080_139185802	0/1	t0001	4013	66	33	17	3	3	9	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	1/0	t0002	4015	62	4	9	43	1	4	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0003	4015	48	4	5	30	0	9	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0004	4014	46	1	11	30	0	4	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0005	4014	12	10	2	0	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0006	4014	10	1	6	0	1	2	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0007	4014	10	0	0	7	1	2	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0008	4013	5	5	0	0	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0009	4014	4	3	1	0	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0010	4014	4	0	0	2	2	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0011	4014	4	1	1	1	1	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0012	4014	3	3	0	0	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0013	4016	3	0	0	3	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0014	4014	3	3	0	0	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0015	4015	2	0	2	0	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0016	4015	2	0	0	0	0	2	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0017	4013	2	2	0	0	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0018	4013	2	2	0	0	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0019	4014	2	2	0	0	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0020	4014	2	2	0	0	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0021	4015	2	0	2	0	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0022	4014	2	2	0	0	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0023	4014	1	0	0	1	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0024	4013	1	0	0	0	0	1	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0025	4014	1	1	0	0	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0026	4014	1	0	0	1	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0027	4015	1	0	0	1	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0028	4015	1	1	0	0	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0029	4016	1	1	0	0	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0030	4013	1	1	0	0	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0031	3974	1	0	0	0	1	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0032	4013	1	0	0	0	0	1	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0033	4013	1	0	0	0	0	1	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0034	4015	1	0	1	0	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0035	4016	1	1	0	0	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0036	4013	1	0	0	1	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0037	4014	1	0	1	0	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0038	4014	1	1	0	0	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0039	4015	1	0	0	1	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	t0040	4013	1	0	0	0	0	1	copy fasta	HECA	chr6	139130080	139185802