JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HECTD1_chr14_31095117_31212793	1/1	t0001	1613	295	76	52	116	12	37	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	t0002	1613	12	0	4	8	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	t0003	1613	8	0	0	8	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	t0004	1613	6	0	0	5	0	1	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	t0005	1613	5	4	1	0	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	t0006	1613	3	2	1	0	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	t0007	1613	3	0	1	0	2	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	t0008	1613	2	0	0	0	0	2	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	t0009	1613	2	2	0	0	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	t0010	1613	2	1	1	0	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	t0011	1613	1	0	0	1	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	t0012	1613	1	0	1	0	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	t0013	1613	1	0	1	0	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	t0014	1613	1	1	0	0	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD2_chr10_91405344_91519820	0/0	t0001	2532	5	4	1	0	0	0	copy fasta	HECTD2	chr10	91405344	91519820
HECTD2_chr10_91405344_91519820	1/0	t0002	2532	5	2	2	0	0	0	copy fasta	HECTD2	chr10	91405344	91519820
HECTD2_chr10_91405344_91519820	0/0	t0003	2532	4	3	1	0	0	0	copy fasta	HECTD2	chr10	91405344	91519820
HECTD2_chr10_91405344_91519820	0/0	t0004	2532	1	1	0	0	0	0	copy fasta	HECTD2	chr10	91405344	91519820
HECTD3_chr1_44997548_45016324	0/0	t0001	1012	196	35	31	97	9	24	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/1	t0002	1012	119	17	30	53	5	13	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	t0003	1012	44	15	7	18	2	2	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	t0004	1012	24	23	1	0	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	1/0	t0005	1012	3	2	0	0	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	t0006	1012	2	1	1	0	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	t0007	1012	1	0	1	0	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	t0008	1012	1	0	1	0	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	t0009	1012	1	0	0	1	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	t0010	1012	1	0	0	1	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	t0011	1012	1	0	0	1	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	t0012	1012	1	0	0	1	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	t0013	1012	1	0	0	0	0	1	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	t0014	1012	1	1	0	0	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD4_chr12_112155195_112387431	0/0	t0001	2504	117	23	20	65	2	7	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	1/1	t0002	2496	44	5	17	13	1	6	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	t0003	2499	36	0	2	28	1	5	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	t0004	2501	19	18	0	1	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	t0005	2499	14	11	3	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	t0006	2508	9	0	0	9	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	t0007	2501	6	5	1	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	t0008	2507	5	3	0	2	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	t0009	2493	3	1	1	1	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	t0010	2502	3	0	0	3	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	t0011	2510	3	3	0	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	t0012	2502	2	2	0	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	t0013	2496	2	0	0	2	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	t0014	2504	1	1	0	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	t0015	2504	1	1	0	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	t0016	2514	1	1	0	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	t0017	2517	1	1	0	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	t0018	2522	1	1	0	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431