JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HECTD4_chr12_112155195_112387431	0/0	t0019	2538	1	0	0	1	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	t0020	2540	1	0	0	1	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECW1_chr7_43107647_43571001	1/0	t0001	4633	56	28	7	11	2	7	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0002	4633	21	1	7	9	1	3	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0003	4633	20	3	5	6	4	2	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/1	t0004	4633	20	1	3	13	0	2	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0005	4634	10	9	1	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0006	4633	8	0	6	0	1	1	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0007	4637	4	4	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0008	4633	3	0	3	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0009	4630	3	3	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0010	4634	3	3	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0011	4633	3	0	2	0	0	1	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0012	4602	2	0	0	2	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0013	4633	2	0	0	0	0	2	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0014	4634	2	2	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0015	4636	2	1	0	1	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0016	4634	2	2	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0017	4633	1	0	1	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0018	4637	1	1	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0019	4634	1	1	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0020	4630	1	0	0	1	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0021	4633	1	0	0	0	0	1	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0022	4633	1	0	0	1	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0023	4633	1	1	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0024	4620	1	0	0	1	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0025	4636	1	0	0	1	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0026	4636	1	0	0	1	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0027	4637	1	1	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0028	4634	1	0	1	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0029	4634	1	1	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0030	4637	1	1	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0031	4630	1	0	0	1	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0032	4633	1	0	0	1	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0033	4633	1	0	0	1	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0034	4633	1	0	0	0	0	1	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0035	4633	1	0	0	1	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0036	4636	1	0	0	1	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	t0037	4634	1	1	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW2_chr2_196189072_196598554	0/0	t0001	7288	19	3	5	0	1	10	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0002	7288	12	12	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/1	t0003	7288	10	6	3	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0004	7287	9	8	0	0	0	1	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	1/0	t0005	7288	8	7	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0006	7288	8	0	3	0	1	4	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0007	7288	4	4	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0008	7288	4	4	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0009	7288	3	3	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0010	7288	3	3	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0011	7288	3	3	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554