JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HECW2_chr2_196189072_196598554	0/0	t0012	7288	3	3	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0013	7288	2	2	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0014	7288	2	0	0	0	1	1	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0015	7288	2	0	0	0	1	1	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0016	7288	2	2	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0017	7288	2	1	1	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0018	7288	2	2	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0019	7288	1	0	0	0	0	1	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0020	7288	1	0	1	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0021	7288	1	1	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0022	7288	1	1	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0023	7288	1	1	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0024	7288	1	0	1	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0025	7288	1	1	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0026	7288	1	0	1	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0027	7288	1	1	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0028	7288	1	1	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0029	7288	1	1	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0030	7288	1	1	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0031	7288	1	0	1	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	t0032	7288	1	1	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HEG1_chr3_124960710_125060997	0/1	t0001	5056	21	0	5	9	0	6	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0002	5058	15	1	2	12	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0003	5059	14	0	0	14	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0004	5050	14	1	2	9	0	2	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0005	5049	12	1	5	4	0	2	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0006	5051	9	1	2	5	0	1	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0007	5058	8	0	1	5	0	2	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0008	5052	8	0	2	6	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0009	5058	7	1	1	5	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0010	5059	7	4	2	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0011	5057	6	3	1	1	0	1	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0012	5058	6	1	0	4	1	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0013	5052	6	1	1	4	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0014	5052	6	1	2	3	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0015	5057	5	0	0	4	0	1	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0016	5057	5	0	1	3	0	1	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0017	5050	5	0	1	4	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0018	5051	5	0	0	5	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0019	5059	4	2	0	1	0	1	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0020	5057	4	0	2	0	1	1	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0021	5057	4	0	0	2	2	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0022	5059	4	4	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0023	5058	4	3	0	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0024	5057	4	0	0	1	0	3	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0025	5052	4	1	2	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0026	5051	4	4	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0027	5050	4	0	1	2	0	1	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0028	5052	4	0	1	3	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0029	5059	3	0	2	1	0	0	copy fasta	HEG1	chr3	124960710	125060997