Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANGPT1_chr8_107244482_107502918	0/0	t0002	2739	77	8	17	30	6	16	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/1	t0003	2734	17	3	6	1	2	4	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	t0004	2734	14	9	1	0	1	3	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	t0005	2741	9	8	1	0	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	t0006	2739	8	8	0	0	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	t0007	2734	8	8	0	0	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	t0008	2739	6	0	0	6	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	t0009	2734	4	0	0	4	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	t0010	2739	3	2	1	0	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	t0011	2733	3	2	1	0	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	t0012	2734	2	0	0	0	0	2	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	t0013	2739	2	2	0	0	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	t0014	2739	2	0	0	2	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	t0015	2739	2	0	0	2	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	t0016	2739	2	0	2	0	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	t0017	2739	1	0	1	0	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	t0018	2734	1	1	0	0	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	t0019	2739	1	0	0	1	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	t0020	2739	1	1	0	0	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	t0021	2734	1	0	0	1	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	t0022	2734	1	0	0	0	1	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	t0023	2734	1	1	0	0	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	t0024	2739	1	0	0	1	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	t0025	2734	1	0	1	0	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	t0026	2739	1	1	0	0	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	t0027	2739	1	1	0	0	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT2_chr8_6494632_6568245	0/0	t0001	3781	80	2	19	49	2	8	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0002	3780	28	1	11	9	3	4	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0003	3781	21	4	4	4	4	5	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0004	3780	20	0	0	16	0	4	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	1/0	t0005	3781	20	14	3	2	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0006	3781	19	11	0	7	0	1	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0007	3781	17	0	0	16	0	1	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0008	3781	9	0	1	7	0	1	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0009	3781	9	3	2	2	0	2	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0010	3780	8	4	0	4	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0011	3781	6	0	3	0	2	1	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0012	3780	6	6	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0013	3780	5	5	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0014	3781	3	0	1	2	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0015	3781	3	0	2	0	0	1	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0016	3781	3	0	0	3	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0017	3781	3	0	1	0	0	2	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0018	3781	3	0	1	2	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0019	3780	3	1	2	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0020	3780	2	0	0	2	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0021	3780	2	0	0	1	0	1	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0022	3780	2	0	0	0	1	1	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0023	3781	2	0	2	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0024	3781	2	2	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245