JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HEG1_chr3_124960710_125060997	0/0	t0030	5055	3	0	0	2	0	1	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0031	5057	3	3	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0032	5056	3	0	0	0	0	3	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0033	5058	3	0	1	2	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0034	5051	3	0	3	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0035	5051	3	1	2	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0036	5050	3	0	3	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0037	5052	3	0	0	3	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0038	5050	3	0	0	3	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0039	5058	2	1	0	0	0	1	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0040	5059	2	2	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0041	5057	2	1	1	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0042	5057	2	0	0	2	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0043	5059	2	0	1	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0044	5058	2	0	1	0	0	1	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0045	5057	2	0	0	2	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0046	5056	2	0	0	2	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0047	5058	2	0	0	2	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0048	5056	2	1	0	0	1	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0049	5056	2	0	1	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0050	5056	2	0	0	0	1	1	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0051	5056	2	0	1	0	1	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0052	5057	2	0	0	2	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0053	5049	2	2	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0054	5051	2	0	0	1	1	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0055	5050	2	1	0	0	1	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0056	5052	2	2	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0057	5050	2	2	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0058	5051	2	1	0	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0059	5052	2	1	1	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0060	5050	2	0	0	2	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0061	5050	2	0	2	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0062	5050	2	0	0	2	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0063	5050	2	2	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	1/0	t0064	5050	2	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0065	5066	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0066	5065	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0067	5066	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0068	5063	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0069	5057	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0070	5058	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0071	5056	1	0	0	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0072	5056	1	0	0	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0073	5059	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0074	5058	1	0	0	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0075	5059	1	0	0	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0076	5059	1	0	1	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0077	5057	1	0	0	0	0	1	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0078	5059	1	0	0	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0079	5057	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997