JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HEG1_chr3_124960710_125060997	0/0	t0130	5051	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0131	5052	1	0	0	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0132	5050	1	0	1	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0133	5050	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0134	5050	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0135	5049	1	0	0	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0136	5049	1	0	0	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0137	5050	1	0	0	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0138	5051	1	0	1	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0139	5051	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0140	5050	1	0	1	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0141	5048	1	0	0	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0142	5050	1	0	0	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0143	5049	1	0	0	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0144	5049	1	0	1	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	t0145	5058	1	0	0	0	0	1	copy fasta	HEG1	chr3	124960710	125060997
HELB_chr12_66297493_66343199	1/1	t0001	209	353	97	58	150	8	38	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	t0002	208	37	1	8	26	0	2	copy fasta	HELB	chr12	66297493	66343199
HELLS_chr10_94540788_94607099	1/1	t0001	612	277	79	48	102	14	32	copy fasta	HELLS	chr10	94540788	94607099
HELLS_chr10_94540788_94607099	0/0	t0002	612	81	11	6	50	2	12	copy fasta	HELLS	chr10	94540788	94607099
HELQ_chr4_83402346_83460823	1/1	t0001	238	278	60	52	120	10	34	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	t0002	235	38	36	2	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELT_chr4_185013490_185025953	1/0	t0001	621	371	74	59	186	17	34	copy fasta	HELT	chr4	185013490	185025953
HELT_chr4_185013490_185025953	0/1	t0002	621	79	14	18	31	1	14	copy fasta	HELT	chr4	185013490	185025953
HELT_chr4_185013490_185025953	0/0	t0003	621	2	2	0	0	0	0	copy fasta	HELT	chr4	185013490	185025953
HELT_chr4_185013490_185025953	0/0	t0004	621	1	0	0	1	0	0	copy fasta	HELT	chr4	185013490	185025953
HELT_chr4_185013490_185025953	0/0	t0005	621	1	0	1	0	0	0	copy fasta	HELT	chr4	185013490	185025953
HELZ2_chr20_63553086_63579239	0/0	t0001	2053	38	8	13	10	1	6	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0002	2053	27	4	4	15	1	3	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0003	2053	26	6	15	1	3	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	1/1	t0004	2053	24	5	4	11	0	2	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0005	2053	22	0	2	19	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0006	2053	16	0	0	16	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0007	2053	14	0	0	12	0	2	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0008	2053	14	4	7	0	2	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0009	2053	11	0	2	7	0	2	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0010	2053	11	2	3	2	1	3	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0011	2053	10	0	0	8	1	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0012	2053	9	0	4	4	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0013	2053	8	6	0	0	1	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0014	2053	7	1	1	2	1	2	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0015	2053	6	4	0	2	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0016	2053	6	6	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0017	2053	5	0	1	4	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0018	2053	5	0	0	5	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0019	2053	5	0	2	3	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0020	2053	4	3	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0021	2053	4	0	0	2	1	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0022	2053	4	0	3	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0023	2053	4	0	3	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239