JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HELZ2_chr20_63553086_63579239	0/0	t0074	2053	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0075	2053	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0076	2053	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0077	2053	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0078	2053	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0079	2053	1	0	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0080	2053	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0081	2053	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0082	2053	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0083	2053	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0084	2053	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0085	2053	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0086	2063	1	0	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0087	2058	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0088	2053	1	0	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0089	2053	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0090	2054	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0091	2053	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0092	2048	1	0	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0093	2048	1	0	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0094	2054	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0095	2053	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0096	2053	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0097	2053	1	0	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0098	2053	1	0	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0099	2048	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0100	2053	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0101	2053	1	0	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0102	2054	1	0	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0103	2058	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0104	2053	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0105	2053	1	0	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0106	2053	1	0	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0107	2048	1	0	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0108	2053	1	0	0	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0109	2053	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0110	2053	1	0	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0111	2053	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0112	2053	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	t0113	2053	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ_chr17_67065444_67250196	0/1	t0001	7993	48	1	13	23	0	10	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	1/0	t0002	7989	44	5	9	19	3	7	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0003	7994	44	6	14	19	0	5	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0004	7993	17	14	3	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0005	7993	12	12	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0006	7994	8	0	1	6	0	1	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0007	7993	7	7	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0008	7993	7	0	3	0	2	2	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0009	7989	5	0	5	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0010	7994	5	5	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196