JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HELZ_chr17_67065444_67250196	0/0	t0011	7993	5	0	0	5	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0012	7994	3	0	1	2	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0013	7993	3	3	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0014	7994	3	0	0	3	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0015	7992	3	0	1	1	0	1	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0016	7989	2	0	1	0	0	1	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0017	7991	2	2	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0018	7991	2	2	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0019	7993	2	2	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0020	7993	2	2	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0021	7992	2	1	1	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0022	7992	2	2	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0023	7993	2	0	2	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0024	7994	2	1	0	0	0	1	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0025	7994	2	1	0	0	1	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0026	7992	2	1	1	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0027	7993	2	1	0	0	1	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0028	7991	2	0	0	0	0	2	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0029	7993	2	0	0	0	0	2	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0030	7989	1	0	1	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0031	7991	1	0	0	0	0	1	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0032	7991	1	1	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0033	7990	1	0	0	0	0	1	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0034	7990	1	0	1	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0035	7989	1	0	1	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0036	7992	1	1	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0037	7991	1	0	1	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0038	7990	1	1	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0039	7992	1	1	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0040	7993	1	0	0	0	0	1	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0041	7993	1	1	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0042	7993	1	1	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0043	7993	1	1	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0044	7992	1	1	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0045	7993	1	1	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0046	7992	1	1	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0047	7992	1	1	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0048	7993	1	0	0	1	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0049	7994	1	0	0	0	0	1	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0050	7994	1	0	0	1	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0051	7988	1	0	1	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0052	7988	1	0	1	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0053	7992	1	1	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0054	7993	1	1	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0055	7991	1	0	0	1	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0056	7993	1	0	0	1	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0057	7993	1	0	0	1	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0058	7992	1	0	0	1	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0059	7993	1	0	1	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	t0060	7993	1	0	0	0	1	0	copy fasta	HELZ	chr17	67065444	67250196