JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HELZ_chr17_67065444_67250196	0/0	t0061	7994	1	1	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HEMGN_chr9_97921791_97943172	0/0	t0001	628	134	30	15	69	4	16	copy fasta	HEMGN	chr9	97921791	97943172
HEMGN_chr9_97921791_97943172	1/1	t0002	630	94	18	19	36	7	12	copy fasta	HEMGN	chr9	97921791	97943172
HEMGN_chr9_97921791_97943172	0/0	t0003	622	72	4	27	22	5	14	copy fasta	HEMGN	chr9	97921791	97943172
HEMGN_chr9_97921791_97943172	0/0	t0004	624	5	4	0	1	0	0	copy fasta	HEMGN	chr9	97921791	97943172
HEMGN_chr9_97921791_97943172	0/0	t0005	622	4	3	1	0	0	0	copy fasta	HEMGN	chr9	97921791	97943172
HEMGN_chr9_97921791_97943172	0/0	t0006	630	4	4	0	0	0	0	copy fasta	HEMGN	chr9	97921791	97943172
HEMGN_chr9_97921791_97943172	0/0	t0007	630	1	1	0	0	0	0	copy fasta	HEMGN	chr9	97921791	97943172
HEMK1_chr3_50564522_50601166	0/0	t0001	15992	40	9	9	20	0	2	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0002	15994	25	0	4	15	2	4	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/1	t0003	15972	22	2	4	12	1	2	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0004	15996	9	0	3	6	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0005	15975	7	7	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0006	15998	7	0	5	2	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0007	15998	7	0	0	6	0	1	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0008	15990	6	1	2	2	1	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0009	15993	6	5	1	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0010	15996	5	0	0	2	1	2	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0011	15994	5	0	1	4	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0012	15992	5	0	1	4	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0013	15972	4	0	4	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0014	15993	4	0	0	4	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0015	15991	4	3	1	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0016	15973	4	4	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0017	16000	4	0	0	4	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0018	15996	3	3	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0019	15990	3	3	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0020	15991	3	1	2	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0021	15988	3	1	0	0	0	2	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0022	15998	3	0	2	0	0	1	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0023	15997	3	0	0	3	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0024	15988	3	2	1	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0025	15975	3	2	1	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0026	15986	3	3	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0027	16000	3	0	1	2	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0028	15996	3	0	0	3	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0029	15980	2	0	2	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0030	15992	2	0	0	2	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0031	15993	2	0	1	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0032	15992	2	0	0	0	0	2	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0033	16001	2	0	0	2	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0034	15999	2	0	0	2	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0035	15995	2	0	0	2	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0036	15993	2	0	1	0	1	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0037	15980	2	1	0	0	1	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0038	15993	2	0	0	2	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0039	15981	2	0	0	0	0	2	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0040	15973	2	2	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0041	15998	2	2	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0042	15992	2	2	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166