JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HEMK1_chr3_50564522_50601166	0/0	t0043	15996	2	0	0	2	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0044	16002	2	0	0	1	0	1	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0045	15992	2	0	0	2	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0046	15994	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0047	15989	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0048	15990	1	0	1	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0049	15998	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0050	15993	1	0	0	0	0	1	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0051	15998	1	0	0	0	0	1	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0052	15989	1	0	1	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0053	15992	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0054	15972	1	0	0	0	0	1	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0055	15973	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0056	15978	1	0	1	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0057	15973	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0058	15972	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0059	15998	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0060	15993	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0061	15994	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0062	15992	1	0	1	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0063	15990	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0064	15994	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0065	15994	1	0	0	0	0	1	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0066	16002	1	0	0	0	0	1	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0067	15998	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0068	15999	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0069	15994	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0070	15992	1	0	0	0	1	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0071	15995	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0072	15996	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0073	15998	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0074	15996	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0075	15996	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0076	15994	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0077	15994	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0078	15994	1	0	1	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0079	15994	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0080	15994	1	0	0	0	0	1	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0081	15995	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0082	15994	1	0	0	0	0	1	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0083	15993	1	0	0	0	0	1	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0084	15992	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0085	15995	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0086	15992	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0087	15996	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0088	15978	1	0	0	0	0	1	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0089	15987	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0090	15975	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0091	15973	1	0	0	0	1	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0092	15996	1	0	0	0	0	1	copy fasta	HEMK1	chr3	50564522	50601166