JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HEMK1_chr3_50564522_50601166	0/0	t0093	15992	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0094	15992	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0095	15992	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0096	15980	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0097	15978	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0098	15980	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0099	15972	1	0	0	0	1	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	1/0	t0100	15977	1	0	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0101	15975	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0102	15975	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0103	15975	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0104	15975	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0105	15992	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0106	15997	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0107	15980	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0108	15998	1	0	1	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0109	15994	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0110	15993	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0111	15992	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0112	15999	1	0	1	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0113	16000	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0114	15996	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0115	15994	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0116	15990	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0117	15986	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0118	15999	1	0	1	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0119	15991	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0120	15992	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0121	15996	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0122	15997	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0123	16010	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0124	16008	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0125	16004	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0126	16000	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0127	15997	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0128	15997	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0129	16005	1	0	0	0	0	1	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0130	16003	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0131	16001	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0132	15997	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0133	16001	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	t0134	15997	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HENMT1_chr1_108643295_108666093	1/1	t0001	481	438	89	84	200	16	47	copy fasta	HENMT1	chr1	108643295	108666093
HENMT1_chr1_108643295_108666093	0/0	t0002	481	3	3	0	0	0	0	copy fasta	HENMT1	chr1	108643295	108666093
HENMT1_chr1_108643295_108666093	0/0	t0003	481	1	0	0	0	0	1	copy fasta	HENMT1	chr1	108643295	108666093
HEPACAM2_chr7_93183534_93231469	0/0	t0001	757	257	86	29	116	2	24	copy fasta	HEPACAM2	chr7	93183534	93231469
HEPACAM2_chr7_93183534_93231469	0/0	t0002	757	95	1	19	56	5	14	copy fasta	HEPACAM2	chr7	93183534	93231469
HEPACAM2_chr7_93183534_93231469	0/0	t0003	757	10	0	9	0	1	0	copy fasta	HEPACAM2	chr7	93183534	93231469
HEPACAM2_chr7_93183534_93231469	0/0	t0004	757	4	0	0	4	0	0	copy fasta	HEPACAM2	chr7	93183534	93231469
HEPACAM2_chr7_93183534_93231469	0/0	t0005	757	1	1	0	0	0	0	copy fasta	HEPACAM2	chr7	93183534	93231469