JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HEPACAM2_chr7_93183534_93231469	0/0	t0006	757	1	0	1	0	0	0	copy fasta	HEPACAM2	chr7	93183534	93231469
HEPACAM_chr11_124914205_124941047	0/0	t0001	1971	77	0	13	57	1	6	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0002	1975	38	2	2	34	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/1	t0003	1976	24	3	4	9	1	6	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0004	1971	21	7	4	8	1	1	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0005	1976	20	0	2	17	0	1	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	1/0	t0006	1975	18	4	10	0	1	2	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0007	1974	15	0	0	15	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0008	1978	13	3	3	2	3	2	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0009	1970	11	6	3	0	2	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0010	1979	11	7	0	1	0	3	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0011	1970	10	0	3	4	0	3	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0012	1974	9	8	1	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0013	1977	9	3	3	0	1	2	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0014	1982	9	0	1	4	1	3	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0015	1975	8	0	3	2	1	2	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0016	1975	7	1	0	4	0	2	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0017	1975	6	0	0	4	0	2	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0018	1972	6	1	0	4	0	1	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0019	1974	6	2	0	4	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0020	1972	5	0	1	4	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0021	1978	5	5	0	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0022	1979	5	2	0	1	0	2	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0023	1980	5	1	1	3	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0024	1977	5	0	4	1	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0025	1976	4	1	1	1	0	1	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0026	1971	4	3	1	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0027	1976	4	4	0	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0028	1979	4	1	2	1	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0029	1973	3	0	0	2	0	1	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0030	1974	3	3	0	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0031	1975	3	3	0	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0032	1981	3	2	0	1	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0033	1977	3	1	0	2	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0034	1979	3	0	1	0	2	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0035	1981	3	0	0	1	0	2	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0036	1975	3	0	3	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0037	1968	2	0	0	2	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0038	1976	2	1	0	0	0	1	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0039	1977	2	1	1	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0040	1977	2	2	0	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0041	1983	2	0	0	1	0	1	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0042	1975	1	0	0	0	0	1	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0043	1971	1	0	0	1	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0044	1979	1	0	0	0	0	1	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0045	1975	1	0	1	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0046	1969	1	0	0	1	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0047	1957	1	0	0	0	0	1	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0048	1974	1	0	0	0	0	1	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0049	1975	1	0	1	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047