Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANGPT2_chr8_6494632_6568245	0/0	t0025	3782	2	0	1	1	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0026	3781	2	2	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0027	3781	2	2	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0028	3781	2	2	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0029	3782	2	2	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0030	3781	1	0	0	1	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0031	3781	1	0	0	1	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0032	3781	1	0	0	1	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0033	3781	1	0	0	0	0	1	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0034	3781	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0035	3781	1	0	0	0	0	1	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0036	3780	1	0	0	0	1	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0037	3781	1	0	0	1	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0038	3781	1	0	0	1	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0039	3781	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0040	3782	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0041	3781	1	0	0	0	0	1	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0042	3781	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0043	3781	1	0	0	1	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0044	3781	1	0	0	1	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0045	3780	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0046	3781	1	0	0	1	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0047	3781	1	0	0	0	0	1	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0048	3780	1	0	0	0	1	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0049	3780	1	0	0	0	0	1	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/1	t0050	3780	1	0	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0051	3781	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0052	3781	1	0	1	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0053	3781	1	0	0	0	0	1	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0054	3781	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0055	3781	1	0	0	0	0	1	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0056	3781	1	0	1	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0057	3781	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0058	3782	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0059	3781	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0060	3781	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0061	3781	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0062	3781	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0063	3781	1	0	0	1	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0064	3781	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0065	3781	1	0	0	0	0	1	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0066	3780	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0067	3780	1	0	1	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0068	3781	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0069	3781	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0070	3781	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0071	3781	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0072	3781	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0073	3781	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0074	3781	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245