JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HEPACAM_chr11_124914205_124941047	0/0	t0050	1973	1	0	0	1	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0051	1980	1	1	0	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0052	1979	1	1	0	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0053	1975	1	1	0	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0054	1981	1	1	0	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0055	1975	1	0	0	0	0	1	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0056	1979	1	1	0	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0057	1976	1	1	0	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0058	1980	1	0	0	0	0	1	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0059	1978	1	0	1	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0060	1978	1	1	0	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0061	1975	1	1	0	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0062	1971	1	0	1	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0063	1978	1	1	0	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0064	1977	1	0	0	0	1	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0065	1978	1	0	0	0	1	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0066	1972	1	0	1	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0067	1974	1	0	1	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	t0068	1976	1	0	1	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPHL1_chr11_94016354_94119208	0/1	t0001	2330	144	34	27	60	5	17	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	t0002	2330	92	12	12	47	3	18	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	t0003	2330	77	14	16	38	0	9	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	t0004	2330	12	12	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	1/0	t0005	2330	9	0	0	8	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	t0006	2330	6	0	0	6	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	t0007	2331	4	3	1	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	t0008	2331	4	0	0	4	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	t0009	2331	4	4	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	t0010	2331	3	3	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	t0011	2330	2	0	0	2	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	t0012	2330	2	2	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	t0013	2330	2	0	0	0	2	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	t0014	2330	2	1	1	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	t0015	2330	1	1	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	t0016	2330	1	0	1	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	t0017	2330	1	0	0	1	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	t0018	2330	1	1	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	t0019	2330	1	1	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPH_chrX_66159247_66272389	1/1	t0001	955	158	25	33	76	7	15	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	t0002	955	58	39	13	1	2	3	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	t0003	955	2	2	0	0	0	0	copy fasta	HEPH	chrX	66159247	66272389
HEPN1_chr11_124914250_124925677	1/1	t0001	1162	336	47	74	172	13	28	copy fasta	HEPN1	chr11	124914250	124925677
HEPN1_chr11_124914250_124925677	0/0	t0002	1166	83	36	5	22	3	17	copy fasta	HEPN1	chr11	124914250	124925677
HEPN1_chr11_124914250_124925677	0/0	t0003	1162	4	4	0	0	0	0	copy fasta	HEPN1	chr11	124914250	124925677
HEPN1_chr11_124914250_124925677	0/0	t0004	1162	2	2	0	0	0	0	copy fasta	HEPN1	chr11	124914250	124925677
HEPN1_chr11_124914250_124925677	0/0	t0005	1162	1	0	1	0	0	0	copy fasta	HEPN1	chr11	124914250	124925677
HEPN1_chr11_124914250_124925677	0/0	t0006	1162	1	1	0	0	0	0	copy fasta	HEPN1	chr11	124914250	124925677
HEPN1_chr11_124914250_124925677	0/0	t0007	1162	1	0	0	0	0	1	copy fasta	HEPN1	chr11	124914250	124925677
HERC1_chr15_63603618_63838948	1/1	t0001	612	186	71	47	38	9	19	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	t0002	612	19	5	7	0	2	5	copy fasta	HERC1	chr15	63603618	63838948