JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HERC1_chr15_63603618_63838948	0/0	t0003	612	9	9	0	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	t0004	612	1	0	0	0	1	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	t0005	612	1	1	0	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC2_chr15_28106040_28327179	0/0	t0001	861	166	26	30	82	0	28	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	1/0	t0002	860	62	47	3	5	0	6	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/1	t0003	861	16	4	9	0	0	2	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	t0004	860	3	3	0	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	t0005	861	1	1	0	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	t0006	860	1	0	0	1	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	t0007	861	1	1	0	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC3_chr4_88587480_88713539	1/0	t0001	1762	83	10	26	39	1	6	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	t0002	1762	78	28	8	37	3	2	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	t0003	1762	60	11	0	43	0	6	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	t0004	1762	33	23	8	1	0	1	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	t0005	1762	11	8	1	0	1	1	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	t0006	1762	10	3	3	4	0	0	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/1	t0007	1762	3	0	2	0	0	0	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	t0008	1762	3	1	1	0	0	1	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	t0009	1762	2	1	0	0	1	0	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	t0010	1762	2	0	1	1	0	0	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	t0011	1762	2	2	0	0	0	0	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	t0012	1762	2	2	0	0	0	0	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	t0013	1762	1	0	0	1	0	0	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	t0014	1762	1	0	1	0	0	0	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	t0015	1762	1	0	1	0	0	0	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	t0016	1762	1	0	0	1	0	0	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	t0017	1762	1	1	0	0	0	0	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	t0018	1762	1	0	0	0	0	1	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	t0019	1726	1	0	0	1	0	0	copy fasta	HERC3	chr4	88587480	88713539
HERC4_chr10_67916905_68080283	1/1	t0001	1275	300	39	57	156	10	36	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	t0002	1275	11	11	0	0	0	0	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	t0003	1275	10	8	2	0	0	0	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	t0004	1275	10	9	1	0	0	0	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	t0005	1274	8	6	2	0	0	0	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	t0006	1275	7	0	0	7	0	0	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	t0007	1275	5	4	1	0	0	0	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	t0008	1275	3	3	0	0	0	0	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	t0009	1275	2	1	1	0	0	0	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	t0010	1275	1	0	0	1	0	0	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	t0011	1275	1	1	0	0	0	0	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	t0012	1275	1	0	0	0	0	1	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	t0013	1275	1	0	0	0	0	1	copy fasta	HERC4	chr10	67916905	68080283
HERC5_chr4_88452119_88511163	1/1	t0001	437	311	79	58	140	9	23	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	0/0	t0002	437	8	7	1	0	0	0	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	0/0	t0003	440	3	2	0	0	0	1	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	0/0	t0004	437	3	0	0	0	0	3	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	0/0	t0005	434	3	0	2	0	1	0	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	0/0	t0006	437	1	0	1	0	0	0	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	0/0	t0007	437	1	0	0	0	0	1	copy fasta	HERC5	chr4	88452119	88511163
HERC6_chr4_88373852_88448097	1/1	t0001	708	167	46	26	52	10	31	copy fasta	HERC6	chr4	88373852	88448097