JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HERC6_chr4_88373852_88448097	0/0	t0002	676	3	3	0	0	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	t0003	708	3	3	0	0	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	t0004	708	1	0	0	0	0	1	copy fasta	HERC6	chr4	88373852	88448097
HERPUD1_chr16_56927142_56949864	0/0	t0001	1678	102	27	25	32	4	14	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	1/1	t0002	1678	97	1	17	59	4	14	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	t0003	1678	76	1	20	48	2	5	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	t0004	1678	63	11	10	30	6	6	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	t0005	1678	18	1	0	14	0	3	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	t0006	1678	16	14	0	1	0	1	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	t0007	1678	13	10	0	3	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	t0008	1678	6	6	0	0	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	t0009	1678	5	0	0	5	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	t0010	1679	4	4	0	0	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	t0011	1678	4	4	0	0	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	t0012	1679	4	4	0	0	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	t0013	1676	4	0	0	4	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	t0014	1678	3	3	0	0	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	t0015	1678	2	2	0	0	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	t0016	1678	1	1	0	0	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	t0017	1678	1	1	0	0	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	t0018	1678	1	1	0	0	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	t0019	1678	1	1	0	0	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	t0020	1678	1	1	0	0	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	t0021	1678	1	1	0	0	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	t0022	1678	1	0	0	0	0	1	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	t0023	1678	1	1	0	0	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	t0024	1678	1	0	0	1	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	t0025	1678	1	0	0	1	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	t0026	1678	1	1	0	0	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD2_chr7_35627659_35700135	0/1	t0001	1665	110	22	28	42	6	11	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	t0002	1664	97	11	21	46	4	15	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	t0003	1665	77	15	5	52	2	3	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	t0004	1665	58	9	5	35	1	8	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	t0005	1666	11	11	0	0	0	0	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	t0006	1664	6	2	2	2	0	0	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	t0007	1666	5	2	1	1	0	1	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	t0008	1666	4	4	0	0	0	0	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	t0009	1664	4	0	1	3	0	0	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	t0010	1665	3	3	0	0	0	0	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	t0011	1665	3	2	1	0	0	0	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	t0012	1663	3	0	0	1	1	1	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	t0013	1665	2	2	0	0	0	0	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	t0014	1665	1	0	0	1	0	0	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	t0015	1665	1	0	0	0	0	1	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	t0016	1665	1	1	0	0	0	0	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	t0017	1665	1	1	0	0	0	0	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	t0018	1665	1	1	0	0	0	0	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	1/0	t0019	1664	1	0	0	0	0	0	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	t0020	1674	1	0	0	1	0	0	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	t0021	1663	1	0	0	1	0	0	copy fasta	HERPUD2	chr7	35627659	35700135