JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HERPUD2_chr7_35627659_35700135	0/0	t0022	1665	1	0	0	1	0	0	copy fasta	HERPUD2	chr7	35627659	35700135
HES1_chr3_194131148_194143732	1/1	t0001	733	175	16	47	78	6	26	copy fasta	HES1	chr3	194131148	194143732
HES1_chr3_194131148_194143732	0/0	t0002	735	84	20	7	49	3	5	copy fasta	HES1	chr3	194131148	194143732
HES1_chr3_194131148_194143732	0/0	t0003	734	72	34	10	20	1	7	copy fasta	HES1	chr3	194131148	194143732
HES1_chr3_194131148_194143732	0/0	t0004	736	67	3	15	38	2	9	copy fasta	HES1	chr3	194131148	194143732
HES1_chr3_194131148_194143732	0/0	t0005	734	13	12	1	0	0	0	copy fasta	HES1	chr3	194131148	194143732
HES1_chr3_194131148_194143732	0/0	t0006	733	4	2	2	0	0	0	copy fasta	HES1	chr3	194131148	194143732
HES1_chr3_194131148_194143732	0/0	t0007	735	4	3	1	0	0	0	copy fasta	HES1	chr3	194131148	194143732
HES1_chr3_194131148_194143732	0/0	t0008	733	3	3	0	0	0	0	copy fasta	HES1	chr3	194131148	194143732
HES1_chr3_194131148_194143732	0/0	t0009	734	3	3	0	0	0	0	copy fasta	HES1	chr3	194131148	194143732
HES1_chr3_194131148_194143732	0/0	t0010	734	2	2	0	0	0	0	copy fasta	HES1	chr3	194131148	194143732
HES1_chr3_194131148_194143732	0/0	t0011	733	2	0	0	2	0	0	copy fasta	HES1	chr3	194131148	194143732
HES1_chr3_194131148_194143732	0/0	t0012	734	2	0	0	2	0	0	copy fasta	HES1	chr3	194131148	194143732
HES1_chr3_194131148_194143732	0/0	t0013	734	1	0	1	0	0	0	copy fasta	HES1	chr3	194131148	194143732
HES1_chr3_194131148_194143732	0/0	t0014	734	1	0	0	0	0	1	copy fasta	HES1	chr3	194131148	194143732
HES1_chr3_194131148_194143732	0/0	t0015	735	1	0	0	1	0	0	copy fasta	HES1	chr3	194131148	194143732
HES2_chr1_6410232_6424919	1/1	t0001	3741	177	7	31	108	9	20	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0002	3739	50	13	2	34	0	1	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0003	3741	35	21	7	4	1	2	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0004	3741	13	6	4	0	0	3	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0005	3742	11	11	0	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0006	3742	9	9	0	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0007	3743	7	0	3	4	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0008	3738	6	2	2	2	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0009	3742	6	0	0	3	0	3	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0010	3742	5	0	0	1	0	4	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0011	3741	5	4	1	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0012	3740	4	0	0	4	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0013	3741	2	2	0	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0014	3741	2	2	0	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0015	3742	2	2	0	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0016	3742	2	2	0	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0017	3731	2	2	0	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0018	3741	2	0	2	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0019	3741	2	2	0	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0020	3741	1	1	0	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0021	3741	1	1	0	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0022	3741	1	1	0	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0023	3738	1	0	0	1	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0024	3739	1	1	0	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0025	3739	1	1	0	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0026	3740	1	1	0	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0027	3741	1	1	0	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0028	3741	1	1	0	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0029	3742	1	0	0	1	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0030	3741	1	0	0	1	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0031	3741	1	0	0	1	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0032	3742	1	1	0	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0033	3742	1	1	0	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0034	3741	1	0	0	1	0	0	copy fasta	HES2	chr1	6410232	6424919