JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HES2_chr1_6410232_6424919	0/0	t0035	3741	1	0	1	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0036	3782	1	0	1	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0037	3741	1	0	0	0	0	1	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0038	3741	1	0	0	1	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	t0039	3741	1	1	0	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES3_chr1_6239179_6250578	1/1	t0001	150	383	94	66	157	18	46	copy fasta	HES3	chr1	6239179	6250578
HES3_chr1_6239179_6250578	0/0	t0002	150	1	0	0	1	0	0	copy fasta	HES3	chr1	6239179	6250578
HES4_chr1_993964_1005097	0/1	t0001	220	272	30	62	133	12	34	copy fasta	HES4	chr1	993964	1005097
HES4_chr1_993964_1005097	1/0	t0002	220	115	60	20	21	3	10	copy fasta	HES4	chr1	993964	1005097
HES4_chr1_993964_1005097	0/0	t0003	220	4	0	2	0	1	1	copy fasta	HES4	chr1	993964	1005097
HES4_chr1_993964_1005097	0/0	t0004	220	3	3	0	0	0	0	copy fasta	HES4	chr1	993964	1005097
HES4_chr1_993964_1005097	0/0	t0005	220	1	1	0	0	0	0	copy fasta	HES4	chr1	993964	1005097
HES4_chr1_993964_1005097	0/0	t0006	220	1	0	0	0	0	1	copy fasta	HES4	chr1	993964	1005097
HES5_chr1_2523745_2535263	0/1	t0001	824	401	89	63	197	11	40	copy fasta	HES5	chr1	2523745	2535263
HES5_chr1_2523745_2535263	0/0	t0002	824	12	1	7	0	1	3	copy fasta	HES5	chr1	2523745	2535263
HES5_chr1_2523745_2535263	0/0	t0003	824	4	4	0	0	0	0	copy fasta	HES5	chr1	2523745	2535263
HES5_chr1_2523745_2535263	0/0	t0004	824	3	2	1	0	0	0	copy fasta	HES5	chr1	2523745	2535263
HES5_chr1_2523745_2535263	0/0	t0005	824	2	0	1	0	0	1	copy fasta	HES5	chr1	2523745	2535263
HES5_chr1_2523745_2535263	0/0	t0006	824	2	0	0	0	0	2	copy fasta	HES5	chr1	2523745	2535263
HES5_chr1_2523745_2535263	0/0	t0007	824	1	0	0	1	0	0	copy fasta	HES5	chr1	2523745	2535263
HES5_chr1_2523745_2535263	0/0	t0008	824	1	1	0	0	0	0	copy fasta	HES5	chr1	2523745	2535263
HES5_chr1_2523745_2535263	0/0	t0009	824	1	1	0	0	0	0	copy fasta	HES5	chr1	2523745	2535263
HES6_chr2_238233267_238245038	1/1	t0001	694	205	17	38	119	9	20	copy fasta	HES6	chr2	238233267	238245038
HES6_chr2_238233267_238245038	0/0	t0002	694	70	9	10	41	2	8	copy fasta	HES6	chr2	238233267	238245038
HES6_chr2_238233267_238245038	0/0	t0003	694	64	5	19	24	4	12	copy fasta	HES6	chr2	238233267	238245038
HES6_chr2_238233267_238245038	0/0	t0004	694	33	8	4	15	1	5	copy fasta	HES6	chr2	238233267	238245038
HES6_chr2_238233267_238245038	0/0	t0005	694	26	23	3	0	0	0	copy fasta	HES6	chr2	238233267	238245038
HES6_chr2_238233267_238245038	0/0	t0006	694	8	7	1	0	0	0	copy fasta	HES6	chr2	238233267	238245038
HES6_chr2_238233267_238245038	0/0	t0007	694	8	8	0	0	0	0	copy fasta	HES6	chr2	238233267	238245038
HES6_chr2_238233267_238245038	0/0	t0008	694	7	3	3	0	0	1	copy fasta	HES6	chr2	238233267	238245038
HES6_chr2_238233267_238245038	0/0	t0009	694	6	6	0	0	0	0	copy fasta	HES6	chr2	238233267	238245038
HES6_chr2_238233267_238245038	0/0	t0010	694	4	4	0	0	0	0	copy fasta	HES6	chr2	238233267	238245038
HES6_chr2_238233267_238245038	0/0	t0011	694	3	1	2	0	0	0	copy fasta	HES6	chr2	238233267	238245038
HES6_chr2_238233267_238245038	0/0	t0012	694	1	0	0	0	0	1	copy fasta	HES6	chr2	238233267	238245038
HES6_chr2_238233267_238245038	0/0	t0013	694	1	0	0	0	0	1	copy fasta	HES6	chr2	238233267	238245038
HES6_chr2_238233267_238245038	0/0	t0014	694	1	1	0	0	0	0	copy fasta	HES6	chr2	238233267	238245038
HES6_chr2_238233267_238245038	0/0	t0015	694	1	0	0	1	0	0	copy fasta	HES6	chr2	238233267	238245038
HES6_chr2_238233267_238245038	0/0	t0016	694	1	1	0	0	0	0	copy fasta	HES6	chr2	238233267	238245038
HES6_chr2_238233267_238245038	0/0	t0017	694	1	1	0	0	0	0	copy fasta	HES6	chr2	238233267	238245038
HES7_chr17_8115592_8129106	0/0	t0001	1002	159	24	27	102	0	6	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/1	t0002	1002	90	1	27	33	13	15	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	t0003	1002	54	15	4	34	0	1	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	t0004	1002	51	12	12	23	1	3	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	t0005	1002	33	20	1	5	0	7	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	t0006	1002	27	1	4	7	1	14	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	t0007	1002	7	7	0	0	0	0	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	t0008	1002	6	6	0	0	0	0	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	t0009	1002	3	3	0	0	0	0	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	t0010	1002	3	0	2	0	1	0	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	t0011	1002	2	2	0	0	0	0	copy fasta	HES7	chr17	8115592	8129106