JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HES7_chr17_8115592_8129106	0/0	t0012	1002	2	1	0	1	0	0	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	t0013	1002	1	0	0	0	0	1	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	t0014	1002	1	0	1	0	0	0	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	t0015	1002	1	0	0	0	0	1	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	t0016	1002	1	1	0	0	0	0	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	t0017	1002	1	1	0	0	0	0	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	1/0	t0018	1002	1	0	0	0	0	0	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	t0019	1002	1	0	0	1	0	0	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	t0020	1002	1	0	0	1	0	0	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	t0021	1002	1	0	0	1	0	0	copy fasta	HES7	chr17	8115592	8129106
HESX1_chr3_57192838_57204978	1/1	t0001	420	336	92	74	110	14	44	copy fasta	HESX1	chr3	57192838	57204978
HEXA_chr15_72335924_72381014	0/0	t0001	3196	86	4	19	39	6	18	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0002	3196	82	10	13	49	3	7	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0003	3196	54	0	2	50	1	1	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	1/0	t0004	3196	34	29	4	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0005	3196	13	11	2	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0006	3196	13	6	7	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0007	3196	12	2	0	10	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0008	3196	12	0	0	12	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0009	3196	10	10	0	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0010	3196	7	7	0	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/1	t0011	3196	4	0	3	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0012	3196	3	1	2	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0013	3196	2	1	1	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0014	3196	2	1	0	0	0	1	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0015	3196	2	2	0	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0016	3196	2	2	0	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0017	3196	2	2	0	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0018	3196	2	2	0	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0019	3196	2	0	0	0	0	2	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0020	3196	1	0	0	1	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0021	3196	1	0	1	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0022	3196	1	0	0	1	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0023	3196	1	1	0	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0024	3196	1	1	0	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0025	3196	1	0	1	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0026	3196	1	0	1	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0027	3196	1	0	0	0	0	1	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0028	3196	1	1	0	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	t0029	3196	1	1	0	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXB_chr5_74680233_74726288	1/1	t0001	142	357	95	66	138	13	43	copy fasta	HEXB	chr5	74680233	74726288
HEXB_chr5_74680233_74726288	0/0	t0002	140	38	1	6	27	1	3	copy fasta	HEXB	chr5	74680233	74726288
HEXB_chr5_74680233_74726288	0/0	t0003	142	1	0	0	1	0	0	copy fasta	HEXB	chr5	74680233	74726288
HEXD_chr17_82413347_82447645	1/1	t0001	707	393	91	72	170	16	42	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	t0002	707	2	2	0	0	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	t0003	707	1	0	0	1	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	t0004	707	1	1	0	0	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	t0005	707	1	1	0	0	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	t0006	707	1	0	0	1	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	t0007	707	1	1	0	0	0	0	copy fasta	HEXD	chr17	82413347	82447645