JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HEXIM1_chr17_45143475_45157099	0/0	t0001	2550	101	14	9	70	0	8	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/1	t0002	2550	75	2	9	58	1	4	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0003	2549	74	3	13	39	7	12	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0004	2550	58	1	20	16	6	15	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0005	2551	46	12	9	20	0	5	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0006	2550	20	19	1	0	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0007	2553	14	14	0	0	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0008	2552	11	7	2	0	0	2	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0009	2550	7	7	0	0	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0010	2549	5	0	4	1	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0011	2545	4	3	1	0	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0012	2548	3	2	1	0	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0013	2550	2	0	2	0	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0014	2550	2	1	0	0	1	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0015	2550	1	1	0	0	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0016	2549	1	0	0	1	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0017	2551	1	1	0	0	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0018	2550	1	0	0	1	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0019	2550	1	0	0	1	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0020	2550	1	0	0	1	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0021	2550	1	0	1	0	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0022	2550	1	0	0	0	0	1	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0023	2550	1	0	0	0	0	1	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	1/0	t0024	2546	1	0	0	0	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0025	2549	1	1	0	0	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0026	2549	1	1	0	0	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0027	2549	1	0	0	0	1	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0028	2550	1	0	0	1	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0029	2550	1	1	0	0	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0030	2550	1	1	0	0	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0031	2551	1	1	0	0	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0032	2551	1	1	0	0	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0033	2552	1	0	0	1	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	t0034	2550	1	1	0	0	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM2_chr17_45156875_45175035	1/1	t0001	576	442	90	80	206	16	48	copy fasta	HEXIM2	chr17	45156875	45175035
HEXIM2_chr17_45156875_45175035	0/0	t0002	576	3	3	0	0	0	0	copy fasta	HEXIM2	chr17	45156875	45175035
HEXIM2_chr17_45156875_45175035	0/0	t0003	576	1	1	0	0	0	0	copy fasta	HEXIM2	chr17	45156875	45175035
HEY1_chr8_79759010_79772767	0/1	t0001	1283	261	58	52	127	8	15	copy fasta	HEY1	chr8	79759010	79772767
HEY1_chr8_79759010_79772767	0/0	t0002	1282	82	22	11	30	2	17	copy fasta	HEY1	chr8	79759010	79772767
HEY1_chr8_79759010_79772767	1/0	t0003	1283	74	0	11	48	6	8	copy fasta	HEY1	chr8	79759010	79772767
HEY1_chr8_79759010_79772767	0/0	t0004	1282	21	2	7	10	0	2	copy fasta	HEY1	chr8	79759010	79772767
HEY1_chr8_79759010_79772767	0/0	t0005	1283	6	2	3	0	0	1	copy fasta	HEY1	chr8	79759010	79772767
HEY1_chr8_79759010_79772767	0/0	t0006	1283	4	4	0	0	0	0	copy fasta	HEY1	chr8	79759010	79772767
HEY1_chr8_79759010_79772767	0/0	t0007	1283	3	3	0	0	0	0	copy fasta	HEY1	chr8	79759010	79772767
HEY1_chr8_79759010_79772767	0/0	t0008	1282	2	2	0	0	0	0	copy fasta	HEY1	chr8	79759010	79772767
HEY1_chr8_79759010_79772767	0/0	t0009	1283	2	2	0	0	0	0	copy fasta	HEY1	chr8	79759010	79772767
HEY1_chr8_79759010_79772767	0/0	t0010	1282	1	0	0	0	0	1	copy fasta	HEY1	chr8	79759010	79772767
HEY1_chr8_79759010_79772767	0/0	t0011	1281	1	0	0	1	0	0	copy fasta	HEY1	chr8	79759010	79772767
HEY1_chr8_79759010_79772767	0/0	t0012	1283	1	1	0	0	0	0	copy fasta	HEY1	chr8	79759010	79772767
HEY1_chr8_79759010_79772767	0/0	t0013	1283	1	0	0	1	0	0	copy fasta	HEY1	chr8	79759010	79772767