JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HEY1_chr8_79759010_79772767	0/0	t0014	1283	1	0	0	1	0	0	copy fasta	HEY1	chr8	79759010	79772767
HEY2_chr6_125744632_125766269	0/1	t0001	1613	173	45	29	70	8	20	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	t0002	1613	151	12	25	92	9	13	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	t0003	1613	24	20	1	3	0	0	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	t0004	1613	12	0	8	3	0	1	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	t0005	1613	8	0	6	0	0	2	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	t0006	1610	7	2	0	5	0	0	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	1/0	t0007	1613	5	0	0	4	0	0	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	t0008	1613	5	0	0	5	0	0	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	t0009	1613	3	3	0	0	0	0	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	t0010	1613	2	0	0	2	0	0	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	t0011	1613	2	0	2	0	0	0	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	t0012	1613	2	2	0	0	0	0	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	t0013	1613	1	0	1	0	0	0	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	t0014	1613	1	1	0	0	0	0	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	t0015	1613	1	1	0	0	0	0	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	t0016	1613	1	1	0	0	0	0	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	t0017	1613	1	0	0	0	1	0	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	t0018	1610	1	1	0	0	0	0	copy fasta	HEY2	chr6	125744632	125766269
HEYL_chr1_39618435_39644643	0/0	t0001	3091	220	12	52	120	7	29	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0002	3091	67	33	8	18	3	5	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0003	3091	45	0	3	41	0	1	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/1	t0004	3091	25	17	4	1	1	1	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0005	3091	12	11	1	0	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0006	3090	10	3	1	0	3	3	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0007	3091	9	0	2	7	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0008	3091	6	3	1	2	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0009	3091	4	3	1	0	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0010	3091	4	0	0	4	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0011	3091	3	1	0	0	0	2	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0012	3090	3	0	2	0	1	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0013	3091	3	3	0	0	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0014	3091	3	3	0	0	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0015	3091	2	0	0	2	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0016	3091	2	0	1	0	0	1	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	1/0	t0017	3091	1	0	0	0	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0018	3091	1	1	0	0	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0019	3091	1	0	0	1	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0020	3091	1	0	0	0	0	1	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0021	3091	1	1	0	0	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0022	3091	1	0	0	0	0	1	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0023	3091	1	0	0	0	0	1	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0024	3091	1	0	0	0	0	1	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0025	3091	1	0	0	0	0	1	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0026	3091	1	0	0	1	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0027	3091	1	0	0	1	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0028	3091	1	1	0	0	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0029	3091	1	0	1	0	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0030	3091	1	0	0	1	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0031	3091	1	0	0	0	1	0	copy fasta	HEYL	chr1	39618435	39644643