JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HEYL_chr1_39618435_39644643	0/0	t0032	3091	1	0	0	1	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0033	3091	1	0	1	0	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0034	3091	1	0	0	1	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0035	3091	1	0	1	0	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0036	3091	1	0	0	0	0	1	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0037	3091	1	0	0	1	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	t0038	3091	1	0	1	0	0	0	copy fasta	HEYL	chr1	39618435	39644643
HFE_chr6_26082429_26103343	0/0	t0001	4131	101	1	22	70	0	8	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	1/0	t0002	4130	46	4	15	8	3	15	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0003	4130	39	13	7	14	2	3	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/1	t0004	4132	31	12	6	4	3	5	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0005	4132	27	1	6	14	1	5	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0006	4130	25	15	5	2	1	2	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0007	4131	11	1	0	10	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0008	4131	10	6	3	0	1	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0009	4130	10	10	0	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0010	4132	9	9	0	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0011	4130	9	0	0	9	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0012	4132	7	7	0	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0013	4130	7	0	0	7	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0014	4130	6	6	0	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0015	4131	5	4	1	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0016	4130	4	0	1	0	2	1	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0017	4131	4	0	0	1	0	3	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0018	4132	3	0	0	3	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0019	4131	3	0	0	3	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0020	4132	3	0	0	3	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0021	4130	3	2	1	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0022	4130	3	0	0	3	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0023	4131	2	2	0	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0024	4130	2	0	2	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0025	4131	2	0	0	2	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0026	4131	2	2	0	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0027	4131	2	0	0	0	0	2	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0028	4132	2	0	0	0	0	2	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0029	4132	1	0	0	0	0	1	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0030	4130	1	0	0	1	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0031	4130	1	0	0	0	0	1	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0032	4132	1	0	0	0	1	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0033	4130	1	0	1	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0034	4132	1	0	1	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0035	4131	1	0	1	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0036	4131	1	0	0	1	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0037	4131	1	0	0	1	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0038	4131	1	0	0	1	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0039	4131	1	1	0	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0040	4130	1	1	0	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0041	4130	1	0	0	1	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0042	4132	1	0	1	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0043	4131	1	0	0	1	0	0	copy fasta	HFE	chr6	26082429	26103343