JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HFE_chr6_26082429_26103343	0/0	t0044	4131	1	0	0	1	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0045	4131	1	0	1	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0046	4131	1	0	0	1	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0047	4132	1	1	0	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0048	4130	1	0	0	1	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0049	4132	1	0	1	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0050	4132	1	0	1	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0051	4130	1	1	0	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	t0052	4130	1	1	0	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFM1_chr1_91255766_91409837	1/0	t0001	592	349	85	60	149	12	42	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/0	t0002	592	9	0	0	9	0	0	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/1	t0003	592	2	0	1	0	0	0	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/0	t0004	592	1	0	1	0	0	0	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/0	t0005	592	1	1	0	0	0	0	copy fasta	HFM1	chr1	91255766	91409837
HGD_chr3_120623172_120687239	1/1	t0001	337	373	90	73	148	16	44	copy fasta	HGD	chr3	120623172	120687239
HGD_chr3_120623172_120687239	0/0	t0002	337	1	0	1	0	0	0	copy fasta	HGD	chr3	120623172	120687239
HGFAC_chr4_3436968_3454486	1/1	t0001	102	454	96	86	202	18	50	copy fasta	HGFAC	chr4	3436968	3454486
HGF_chr7_81694010_81775047	0/0	t0001	3648	145	23	25	67	3	27	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	1/1	t0002	3648	41	4	9	20	1	5	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	t0003	3648	35	13	10	11	0	1	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	t0004	3646	10	10	0	0	0	0	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	t0005	3646	9	9	0	0	0	0	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	t0006	3648	8	6	1	0	0	1	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	t0007	3648	5	4	1	0	0	0	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	t0008	3643	5	5	0	0	0	0	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	t0009	3646	4	4	0	0	0	0	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	t0010	3648	4	4	0	0	0	0	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	t0011	3648	2	0	2	0	0	0	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	t0012	3648	1	0	0	1	0	0	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	t0013	3648	1	0	0	1	0	0	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	t0014	3648	1	1	0	0	0	0	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	t0015	3648	1	1	0	0	0	0	copy fasta	HGF	chr7	81694010	81775047
HGH1_chr8_144132774_144145851	1/1	t0001	1362	292	42	59	141	6	42	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	t0002	1361	36	36	0	0	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	t0003	1361	5	5	0	0	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	t0004	1361	2	2	0	0	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	t0005	1362	1	1	0	0	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	t0006	1361	1	1	0	0	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	t0007	1362	1	0	1	0	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	t0008	1362	1	0	0	1	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	t0009	1362	1	0	0	1	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	t0010	1362	1	0	0	1	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	t0011	1362	1	1	0	0	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGSNAT_chr8_43135464_43207855	0/1	t0001	3320	125	25	42	39	1	17	copy fasta	HGSNAT	chr8	43135464	43207855
HGSNAT_chr8_43135464_43207855	1/0	t0002	3320	64	22	12	26	0	3	copy fasta	HGSNAT	chr8	43135464	43207855
HGSNAT_chr8_43135464_43207855	0/0	t0003	3320	17	16	1	0	0	0	copy fasta	HGSNAT	chr8	43135464	43207855
HGSNAT_chr8_43135464_43207855	0/0	t0004	3320	6	5	1	0	0	0	copy fasta	HGSNAT	chr8	43135464	43207855
HGSNAT_chr8_43135464_43207855	0/0	t0005	3320	5	5	0	0	0	0	copy fasta	HGSNAT	chr8	43135464	43207855
HGSNAT_chr8_43135464_43207855	0/0	t0006	3320	4	0	1	0	1	2	copy fasta	HGSNAT	chr8	43135464	43207855
HGSNAT_chr8_43135464_43207855	0/0	t0007	3320	3	0	3	0	0	0	copy fasta	HGSNAT	chr8	43135464	43207855