Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANGPT2_chr8_6494632_6568245	0/0	t0075	3781	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0076	3781	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0077	3781	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0078	3781	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	t0079	3781	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT4_chr20_864900_921334	0/1	t0001	3181	141	8	27	84	5	16	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0002	3181	135	19	26	73	4	13	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0003	3181	55	16	4	27	0	8	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0004	3181	25	20	5	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0005	3181	14	1	10	0	0	3	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	1/0	t0006	3181	7	4	0	0	0	2	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0007	3181	7	0	0	6	1	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0008	3181	6	6	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0009	3181	6	5	1	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0010	3181	4	4	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0011	3181	4	0	0	0	0	4	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0012	3181	3	0	0	3	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0013	3181	3	3	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0014	3181	2	2	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0015	3181	2	0	0	2	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0016	3181	2	2	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0017	3182	2	0	2	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0018	3181	2	2	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0019	3181	1	0	0	1	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0020	3181	1	0	0	0	0	1	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0021	3181	1	0	0	1	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0022	3181	1	1	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0023	3181	1	1	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0024	3181	1	0	0	0	0	1	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0025	3181	1	1	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0026	3181	1	0	0	1	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0027	3181	1	1	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0028	3182	1	0	0	1	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0029	3182	1	0	0	1	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	t0030	3180	1	0	1	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPTL1_chr1_178844535_178876077	0/0	t0001	2068	166	22	36	84	3	21	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	1/1	t0002	2068	148	17	26	83	5	15	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	t0003	2068	43	13	5	25	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	t0004	2069	13	13	0	0	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	t0005	2065	12	11	1	0	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	t0006	2068	10	10	0	0	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	t0007	2069	5	0	3	0	2	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	t0008	2068	4	0	2	0	2	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	t0009	2068	3	2	1	0	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	t0010	2069	3	0	1	0	0	2	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	t0011	2068	2	2	0	0	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	t0012	2069	2	2	0	0	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	t0013	2068	2	2	0	0	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	t0014	2068	2	0	2	0	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	t0015	2068	1	0	0	1	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077