JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HGSNAT_chr8_43135464_43207855	0/0	t0008	3321	2	2	0	0	0	0	copy fasta	HGSNAT	chr8	43135464	43207855
HGSNAT_chr8_43135464_43207855	0/0	t0009	3320	2	2	0	0	0	0	copy fasta	HGSNAT	chr8	43135464	43207855
HGSNAT_chr8_43135464_43207855	0/0	t0010	3320	1	1	0	0	0	0	copy fasta	HGSNAT	chr8	43135464	43207855
HGSNAT_chr8_43135464_43207855	0/0	t0011	3320	1	0	1	0	0	0	copy fasta	HGSNAT	chr8	43135464	43207855
HGSNAT_chr8_43135464_43207855	0/0	t0012	3320	1	0	0	1	0	0	copy fasta	HGSNAT	chr8	43135464	43207855
HGSNAT_chr8_43135464_43207855	0/0	t0013	3320	1	1	0	0	0	0	copy fasta	HGSNAT	chr8	43135464	43207855
HGSNAT_chr8_43135464_43207855	0/0	t0014	3320	1	1	0	0	0	0	copy fasta	HGSNAT	chr8	43135464	43207855
HGSNAT_chr8_43135464_43207855	0/0	t0015	3320	1	0	1	0	0	0	copy fasta	HGSNAT	chr8	43135464	43207855
HGS_chr17_81679011_81707121	1/0	t0001	560	302	60	67	125	12	37	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	t0002	560	69	5	4	54	2	4	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/1	t0003	560	17	3	6	0	2	5	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	t0004	560	13	12	1	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	t0005	560	3	3	0	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	t0006	560	2	2	0	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	t0007	560	2	2	0	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	t0008	560	2	2	0	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	t0009	560	1	1	0	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	t0010	560	1	0	0	1	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	t0011	560	1	0	0	1	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	t0012	560	1	0	0	1	0	0	copy fasta	HGS	chr17	81679011	81707121
HHATL_chr3_42687663_42707798	1/1	t0001	322	411	93	86	170	14	46	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	t0002	322	1	1	0	0	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHAT_chr1_210323902_210681290	0/0	t0001	2158	72	15	16	32	2	7	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	t0002	2158	54	22	7	25	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	t0003	2157	48	4	17	11	6	10	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	1/0	t0004	2158	33	7	5	14	2	4	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	t0005	2157	14	7	1	6	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/1	t0006	2158	12	7	1	0	0	3	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	t0007	2158	8	8	0	0	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	t0008	2158	3	3	0	0	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	t0009	2157	3	3	0	0	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	t0010	2158	3	2	1	0	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	t0011	2157	2	0	2	0	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	t0012	2159	2	1	1	0	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	t0013	2159	2	0	2	0	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	t0014	2157	2	2	0	0	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	t0015	2157	1	0	0	1	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	t0016	2159	1	0	0	1	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	t0017	2158	1	0	1	0	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	t0018	2159	1	1	0	0	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	t0019	2157	1	1	0	0	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	t0020	2157	1	0	0	0	0	1	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	t0021	2157	1	0	0	1	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	t0022	2157	1	0	0	0	0	1	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	t0023	2158	1	1	0	0	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	t0024	2159	1	0	0	1	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHEX_chr10_92684955_92700647	1/1	t0001	912	306	79	68	104	16	37	copy fasta	HHEX	chr10	92684955	92700647
HHEX_chr10_92684955_92700647	0/0	t0002	912	60	13	8	36	0	3	copy fasta	HHEX	chr10	92684955	92700647
HHEX_chr10_92684955_92700647	0/0	t0003	912	2	0	2	0	0	0	copy fasta	HHEX	chr10	92684955	92700647
HHEX_chr10_92684955_92700647	0/0	t0004	912	2	0	0	0	0	2	copy fasta	HHEX	chr10	92684955	92700647