JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HHEX_chr10_92684955_92700647	0/0	t0005	912	1	1	0	0	0	0	copy fasta	HHEX	chr10	92684955	92700647
HHEX_chr10_92684955_92700647	0/0	t0006	912	1	0	0	0	0	1	copy fasta	HHEX	chr10	92684955	92700647
HHEX_chr10_92684955_92700647	0/0	t0007	912	1	1	0	0	0	0	copy fasta	HHEX	chr10	92684955	92700647
HHEX_chr10_92684955_92700647	0/0	t0008	912	1	0	0	0	0	1	copy fasta	HHEX	chr10	92684955	92700647
HHIPL1_chr14_99640129_99685569	0/1	t0001	5023	107	26	19	44	6	11	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0002	5022	103	26	16	50	2	9	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0003	5023	73	1	16	37	4	15	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0004	5022	17	7	6	4	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0005	5024	14	13	1	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0006	5023	7	0	5	0	1	1	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0007	5023	5	0	4	0	0	1	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0008	5023	5	0	0	5	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	1/0	t0009	5023	4	3	0	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0010	5023	4	4	0	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0011	5022	3	3	0	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0012	5023	2	0	0	0	1	1	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0013	5023	2	0	1	0	1	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0014	5022	2	0	0	2	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0015	5022	2	0	0	2	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0016	5022	1	0	1	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0017	5022	1	0	0	1	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0018	5023	1	1	0	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0019	5022	1	1	0	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0020	5022	1	1	0	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0021	5024	1	1	0	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0022	5024	1	0	0	1	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0023	5024	1	1	0	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0024	5023	1	1	0	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0025	5023	1	1	0	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0026	5023	1	0	1	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0027	5022	1	0	0	0	0	1	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0028	5022	1	0	1	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0029	5017	1	0	0	0	0	1	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0030	5022	1	0	1	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0031	5022	1	1	0	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0032	5022	1	1	0	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0033	5022	1	0	1	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0034	5023	1	0	0	0	0	1	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0035	5022	1	0	0	0	1	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0036	5023	1	0	1	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0037	5023	1	0	0	0	0	1	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0038	5023	1	1	0	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	t0039	5022	1	1	0	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL2_chr1_222517264_222553104	1/1	t0001	398	415	93	74	196	12	38	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	t0002	398	2	2	0	0	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	t0003	398	1	1	0	0	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIP_chr4_144641156_144750271	0/0	t0001	7775	68	3	11	47	4	3	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0002	7773	67	12	8	44	0	3	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0003	7773	43	1	14	19	3	6	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0004	7773	15	14	1	0	0	0	copy fasta	HHIP	chr4	144641156	144750271