JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HHIP_chr4_144641156_144750271	0/0	t0005	7773	13	4	2	6	0	1	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0006	7772	7	6	1	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0007	7773	7	0	0	7	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/1	t0008	7775	6	0	1	2	2	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0009	7773	6	6	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0010	7775	5	4	1	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0011	7773	5	0	0	4	0	1	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0012	7773	3	3	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0013	7772	3	0	0	2	0	1	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0014	7774	3	3	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0015	7775	3	3	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0016	7773	3	0	0	3	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0017	7773	3	0	1	0	0	2	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0018	7781	3	3	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0019	7772	2	1	1	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0020	7772	2	2	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0021	7773	2	0	1	0	0	1	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0022	7774	2	0	0	2	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0023	7732	2	0	0	2	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0024	7772	2	1	0	0	0	1	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0025	7773	1	0	0	1	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0026	7772	1	0	1	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0027	7772	1	0	0	0	1	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0028	7773	1	1	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0029	7773	1	0	0	1	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0030	7773	1	0	0	1	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0031	7773	1	0	0	0	0	1	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0032	7773	1	0	0	0	0	1	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0033	7773	1	1	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0034	7775	1	0	0	1	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0035	7772	1	1	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0036	7773	1	1	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0037	7772	1	0	0	1	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0038	7772	1	0	0	1	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0039	7773	1	0	1	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0040	7772	1	0	0	1	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0041	7773	1	0	0	0	0	1	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0042	7771	1	0	0	0	0	1	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0043	7746	1	0	0	0	0	1	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0044	7773	1	1	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0045	7774	1	1	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0046	7773	1	1	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0047	7772	1	1	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0048	7774	1	1	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0049	7775	1	0	0	1	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0050	7775	1	0	0	0	0	1	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0051	7800	1	0	0	0	0	1	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0052	7773	1	0	0	1	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0053	7775	1	0	0	1	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	1/0	t0054	7835	1	0	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271