JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HHIP_chr4_144641156_144750271	0/0	t0055	7835	1	1	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0056	7806	1	1	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0057	7773	1	1	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0058	7777	1	0	0	1	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0059	7773	1	1	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0060	7793	1	1	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0061	7773	1	1	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0062	7772	1	0	1	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0063	7774	1	1	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0064	7773	1	0	1	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	t0065	7773	1	0	0	1	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHLA1_chr8_132056480_132116157	1/1	t0001	2593	204	31	54	84	11	22	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	t0002	2593	105	16	13	56	1	19	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	t0003	2593	11	10	1	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	t0004	2593	10	0	3	6	0	1	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	t0005	2593	10	8	2	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	t0006	2593	8	8	0	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	t0007	2593	5	4	1	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	t0008	2593	5	5	0	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	t0009	2593	5	4	1	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	t0010	2593	3	3	0	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	t0011	2593	1	1	0	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	t0012	2593	1	1	0	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	t0013	2593	1	1	0	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	t0014	2593	1	0	0	1	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	t0015	2593	1	0	0	0	0	1	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	t0016	2593	1	0	1	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	t0017	2593	1	0	0	1	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	t0018	2593	1	0	1	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	t0019	2593	1	1	0	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	t0020	2593	1	1	0	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	t0021	2593	1	1	0	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	t0022	2593	1	0	1	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	t0023	2593	1	0	0	0	0	1	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	t0024	2593	1	1	0	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA2_chr3_108291548_108383285	0/0	t0001	1173	74	25	24	7	6	12	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	t0002	1173	61	4	4	44	1	8	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	t0003	1173	55	0	9	41	0	5	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	t0004	1173	38	16	3	19	0	0	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	t0005	1173	21	1	9	0	4	7	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	t0006	1173	16	0	0	13	0	3	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	t0007	1173	11	7	2	0	0	2	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	t0008	1173	10	0	3	7	0	0	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	t0009	1173	10	0	2	8	0	0	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/1	t0010	1173	8	5	2	0	0	0	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	t0011	1173	3	3	0	0	0	0	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	t0012	1173	3	0	1	0	1	1	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	t0013	1173	3	3	0	0	0	0	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	t0014	1173	3	2	1	0	0	0	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	1/0	t0015	1173	2	1	0	0	0	0	copy fasta	HHLA2	chr3	108291548	108383285