JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HHLA2_chr3_108291548_108383285	0/0	t0016	1173	1	0	0	1	0	0	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	t0017	1173	1	1	0	0	0	0	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	t0018	1173	1	1	0	0	0	0	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	t0019	1173	1	1	0	0	0	0	copy fasta	HHLA2	chr3	108291548	108383285
HIBADH_chr7_27520442_27667883	0/0	t0001	868	267	74	51	113	7	22	copy fasta	HIBADH	chr7	27520442	27667883
HIBADH_chr7_27520442_27667883	1/1	t0002	868	29	2	9	5	5	6	copy fasta	HIBADH	chr7	27520442	27667883
HIBADH_chr7_27520442_27667883	0/0	t0003	868	25	7	8	0	2	8	copy fasta	HIBADH	chr7	27520442	27667883
HIBADH_chr7_27520442_27667883	0/0	t0004	868	1	0	0	1	0	0	copy fasta	HIBADH	chr7	27520442	27667883
HIBADH_chr7_27520442_27667883	0/0	t0005	868	1	0	0	0	0	1	copy fasta	HIBADH	chr7	27520442	27667883
HIBADH_chr7_27520442_27667883	0/0	t0006	868	1	0	0	1	0	0	copy fasta	HIBADH	chr7	27520442	27667883
HIBADH_chr7_27520442_27667883	0/0	t0007	868	1	0	0	0	0	1	copy fasta	HIBADH	chr7	27520442	27667883
HIBADH_chr7_27520442_27667883	0/0	t0008	868	1	1	0	0	0	0	copy fasta	HIBADH	chr7	27520442	27667883
HIBCH_chr2_190198920_190324826	0/0	t0001	1274	102	28	17	47	5	5	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	t0002	1274	88	7	13	62	1	5	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/1	t0003	1274	66	2	18	24	7	14	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	t0004	1274	33	0	1	32	0	0	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	1/0	t0005	1274	29	19	5	3	1	0	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	t0006	1274	24	12	1	6	0	5	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	t0007	1274	5	0	0	4	0	1	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	t0008	1274	4	4	0	0	0	0	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	t0009	1270	2	0	2	0	0	0	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	t0010	1274	2	0	0	2	0	0	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	t0011	1274	2	2	0	0	0	0	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	t0012	1274	2	2	0	0	0	0	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	t0013	1274	1	0	0	0	0	1	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	t0014	1274	1	0	1	0	0	0	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	t0015	1274	1	1	0	0	0	0	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	t0016	1274	1	1	0	0	0	0	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	t0017	1274	1	1	0	0	0	0	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	t0018	1270	1	0	0	1	0	0	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	t0019	1274	1	0	0	0	0	1	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	t0020	1274	1	0	0	1	0	0	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	t0021	1274	1	1	0	0	0	0	copy fasta	HIBCH	chr2	190198920	190324826
HIC1_chr17_2050103_2068241	0/1	t0001	4565	83	4	29	36	3	10	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0002	4565	53	1	5	43	1	3	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0003	4566	31	2	15	6	0	8	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	1/0	t0004	4563	28	6	5	4	2	10	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0005	4565	20	0	1	19	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0006	4566	18	1	1	13	0	3	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0007	4564	17	11	2	0	1	3	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0008	4564	15	15	0	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0009	4566	9	0	0	9	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0010	4565	8	1	2	0	3	2	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0011	4564	8	0	0	8	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0012	4564	7	7	0	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0013	4564	4	4	0	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0014	4564	4	4	0	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0015	4564	4	0	2	2	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0016	4565	3	3	0	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0017	4564	3	1	2	0	0	0	copy fasta	HIC1	chr17	2050103	2068241