JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HIC1_chr17_2050103_2068241	0/0	t0068	4563	1	0	0	0	1	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0069	4564	1	1	0	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0070	4566	1	0	0	0	0	1	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0071	4564	1	1	0	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0072	4563	1	0	1	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0073	4565	1	1	0	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0074	4564	1	1	0	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0075	4564	1	0	0	1	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0076	4562	1	0	0	1	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0077	4563	1	1	0	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0078	4566	1	0	0	1	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0079	4565	1	0	0	1	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0080	4564	1	0	0	1	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0081	4565	1	0	0	1	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0082	4566	1	0	0	0	0	1	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0083	4565	1	0	0	1	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0084	4565	1	0	0	1	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0085	4563	1	0	0	1	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0086	4564	1	0	0	1	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0087	4565	1	0	0	0	1	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0088	4565	1	0	1	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	t0089	4566	1	0	1	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC2_chr22_21412371_21456463	0/0	t0001	4983	63	13	15	17	3	15	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0002	4985	61	1	16	31	3	10	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0003	4983	25	23	2	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0004	4983	22	0	0	22	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	1/0	t0005	4984	14	0	0	6	0	7	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0006	4984	8	6	2	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0007	4983	8	4	3	0	1	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0008	4986	7	1	1	5	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0009	4985	5	5	0	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0010	4983	5	5	0	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0011	4983	3	0	0	3	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0012	4983	3	0	1	2	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0013	4984	3	0	0	3	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0014	4979	3	3	0	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0015	4983	3	1	1	0	0	1	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0016	4985	3	0	0	3	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0017	4983	3	0	3	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0018	4983	2	0	2	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0019	4983	2	2	0	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/1	t0020	4983	2	1	0	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0021	4985	2	0	2	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0022	4985	2	2	0	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0023	4985	2	1	1	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0024	4985	1	0	0	0	0	1	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0025	4983	1	0	0	1	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0026	4984	1	0	0	0	0	1	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0027	4985	1	0	0	1	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0028	4984	1	0	0	1	0	0	copy fasta	HIC2	chr22	21412371	21456463