JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HIC2_chr22_21412371_21456463	0/0	t0029	4986	1	0	0	1	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0030	4980	1	1	0	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0031	4984	1	1	0	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0032	4983	1	0	0	0	1	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0033	4983	1	1	0	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0034	4983	1	0	0	1	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0035	4983	1	0	0	0	0	1	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0036	4984	1	0	0	1	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0037	4984	1	0	0	0	0	1	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0038	4983	1	0	0	1	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0039	4983	1	0	0	1	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0040	4983	1	1	0	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0041	4981	1	0	0	0	0	1	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0042	4983	1	0	1	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0043	4985	1	1	0	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0044	4983	1	1	0	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0045	4983	1	1	0	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0046	4983	1	0	0	1	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0047	4983	1	1	0	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0048	4983	1	1	0	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0049	4983	1	1	0	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0050	4983	1	0	1	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0051	4985	1	0	1	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0052	4985	1	0	0	1	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0053	4985	1	0	0	1	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0054	4985	1	0	0	1	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0055	4985	1	0	0	1	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0056	4985	1	0	1	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0057	4985	1	0	0	1	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0058	4985	1	0	1	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0059	4985	1	0	0	1	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	t0060	4983	1	0	0	1	0	0	copy fasta	HIC2	chr22	21412371	21456463
HID1_chr17_74945742_74977759	0/0	t0001	932	175	44	55	39	8	29	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	1/0	t0002	932	102	30	8	55	0	8	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/1	t0003	934	62	7	7	35	8	4	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	t0004	932	11	10	1	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	t0005	934	3	0	3	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	t0006	932	2	2	0	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	t0007	934	2	2	0	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	t0008	934	2	0	2	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	t0009	932	1	1	0	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	t0010	932	1	0	0	0	0	1	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	t0011	932	1	1	0	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	t0012	934	1	1	0	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	t0013	934	1	0	0	1	0	0	copy fasta	HID1	chr17	74945742	74977759
HIF1AN_chr10_100530943_100564998	0/0	t0001	11878	107	27	16	40	5	19	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0002	11878	28	3	5	18	0	2	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0003	11850	21	1	0	17	0	3	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0004	11878	14	0	0	13	0	1	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0005	11879	8	8	0	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998