JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HIF1AN_chr10_100530943_100564998	0/0	t0056	11878	1	0	0	1	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0057	11878	1	0	1	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0058	11878	1	0	1	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0059	11878	1	0	1	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0060	11878	1	0	1	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0061	11878	1	0	0	1	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0062	11878	1	0	0	1	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0063	11878	1	0	0	1	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0064	11878	1	0	0	1	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0065	11878	1	0	0	1	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0066	11878	1	0	0	1	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0067	11873	1	1	0	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0068	11875	1	1	0	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0069	11875	1	1	0	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0070	11875	1	1	0	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0071	11871	1	1	0	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0072	11871	1	1	0	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0073	11872	1	1	0	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0074	11871	1	1	0	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0075	11867	1	1	0	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0076	11866	1	1	0	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0077	11865	1	0	1	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0078	11869	1	1	0	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0079	11869	1	1	0	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0080	11871	1	1	0	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0081	11878	1	0	0	1	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0082	11877	1	0	1	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0083	11876	1	0	1	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0084	11879	1	1	0	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0085	11878	1	0	0	1	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0086	11850	1	1	0	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	t0087	11877	1	0	1	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1A_chr14_61690513_61753258	0/1	t0001	1467	200	44	32	108	6	9	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	1/0	t0002	1466	96	23	13	48	2	9	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	t0003	1467	12	3	2	0	4	3	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	t0004	1467	2	1	1	0	0	0	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	t0005	1466	2	0	0	2	0	0	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	t0006	1467	1	0	0	0	0	1	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	t0007	1467	1	1	0	0	0	0	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	t0008	1466	1	1	0	0	0	0	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	t0009	1467	1	0	0	1	0	0	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	t0010	1466	1	1	0	0	0	0	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	t0011	1466	1	0	0	0	0	1	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	t0012	1412	1	0	0	0	0	1	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	t0013	1466	1	1	0	0	0	0	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	t0014	1467	1	1	0	0	0	0	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	t0015	1466	1	0	0	1	0	0	copy fasta	HIF1A	chr14	61690513	61753258
HIF3A_chr19_46292042_46348433	0/1	t0001	3847	133	29	25	46	7	25	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0002	3847	89	0	15	64	1	9	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0003	3847	41	0	10	30	0	1	copy fasta	HIF3A	chr19	46292042	46348433