Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANGPTL1_chr1_178844535_178876077	0/0	t0016	2068	1	0	0	1	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	t0017	2068	1	1	0	0	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	t0018	2068	1	0	1	0	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	t0019	2068	1	0	0	1	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	t0020	2068	1	0	0	0	0	1	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	t0021	2069	1	1	0	0	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	t0022	2068	1	0	0	0	0	1	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	t0023	2038	1	0	0	1	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL2_chr9_127082348_127127635	1/0	t0001	1962	249	64	45	99	13	27	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/1	t0002	1962	61	3	17	33	3	4	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	t0003	1962	13	1	0	12	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	t0004	1962	8	6	2	0	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	t0005	1962	7	7	0	0	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	t0006	1962	6	0	0	6	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	t0007	1962	5	0	2	3	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	t0008	1962	4	4	0	0	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	t0009	1962	3	0	1	0	2	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	t0010	1962	2	1	0	0	0	1	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	t0011	1962	1	1	0	0	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	t0012	1962	1	0	0	0	0	1	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	t0013	1962	1	0	0	1	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	t0014	1962	1	1	0	0	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	t0015	1962	1	0	0	0	0	1	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	t0016	1962	1	1	0	0	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	t0017	1962	1	0	0	1	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	t0018	1962	1	0	1	0	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	t0019	1962	1	1	0	0	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	t0020	1962	1	1	0	0	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	t0021	1962	1	1	0	0	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	t0022	1962	1	0	0	1	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	t0023	1962	1	0	0	1	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	t0024	1962	1	0	0	1	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL3_chr1_62592520_62611313	1/1	t0001	1544	239	40	48	116	9	24	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	t0002	1535	105	32	20	33	6	14	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	t0003	1544	6	4	2	0	0	0	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	t0004	1544	3	2	1	0	0	0	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	t0005	1535	2	0	0	2	0	0	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	t0006	1535	2	2	0	0	0	0	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	t0007	1535	1	0	0	0	0	1	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	t0008	1544	1	0	0	1	0	0	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	t0009	1544	1	0	0	0	0	1	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	t0010	1544	1	1	0	0	0	0	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	t0011	1544	1	0	0	1	0	0	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	t0012	1544	1	0	1	0	0	0	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	t0013	1544	1	0	0	0	1	0	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	t0014	1544	1	0	0	1	0	0	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	t0015	1544	1	1	0	0	0	0	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL4_chr19_8359155_8379370	1/1	t0001	652	350	59	73	165	15	36	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	t0002	652	25	7	6	0	1	11	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	t0003	652	11	11	0	0	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370