JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HIF3A_chr19_46292042_46348433	0/0	t0004	3846	23	8	2	11	1	1	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0005	3848	11	0	3	7	0	1	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0006	3847	10	9	1	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0007	3847	9	0	3	1	0	5	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0008	3844	7	6	1	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0009	3847	7	6	1	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0010	3846	6	0	0	5	1	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	1/0	t0011	3847	6	0	2	0	3	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0012	3846	5	5	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0013	3846	4	0	0	3	0	1	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0014	3846	4	4	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0015	3847	4	0	0	4	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0016	3847	4	0	0	4	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0017	3847	3	0	0	0	0	3	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0018	3846	3	0	0	1	2	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0019	3847	2	0	1	0	1	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0020	3846	2	0	1	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0021	3847	2	0	0	2	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0022	3848	2	0	2	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0023	3846	2	0	1	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0024	3845	2	2	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0025	3847	2	2	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0026	3846	2	0	1	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0027	3847	2	1	0	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0028	3846	2	2	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0029	3847	2	2	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0030	3845	1	1	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0031	3846	1	1	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0032	3845	1	0	0	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0033	3847	1	0	0	0	0	1	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0034	3845	1	0	0	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0035	3845	1	0	0	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0036	3847	1	0	0	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0037	3845	1	1	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0038	3847	1	0	1	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0039	3845	1	0	1	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0040	3847	1	1	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0041	3847	1	0	0	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0042	3847	1	1	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0043	3847	1	0	0	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0044	3847	1	1	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0045	3847	1	1	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0046	3847	1	1	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0047	3847	1	1	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0048	3847	1	0	0	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0049	3847	1	0	0	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0050	3846	1	0	0	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0051	3846	1	0	0	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0052	3847	1	0	1	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0053	3847	1	1	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433