JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HIF3A_chr19_46292042_46348433	0/0	t0054	3847	1	0	0	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0055	3847	1	0	0	0	0	1	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	t0056	3847	1	0	0	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIGD1A_chr3_42777908_42809490	0/1	t0001	2440	163	45	25	58	8	26	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1A_chr3_42777908_42809490	0/0	t0002	2440	162	14	35	97	2	14	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1A_chr3_42777908_42809490	0/0	t0003	2440	28	8	11	0	2	7	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1A_chr3_42777908_42809490	0/0	t0004	2440	11	9	2	0	0	0	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1A_chr3_42777908_42809490	1/0	t0005	2441	6	4	1	0	0	0	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1A_chr3_42777908_42809490	0/0	t0006	2440	5	4	1	0	0	0	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1A_chr3_42777908_42809490	0/0	t0007	2439	3	0	0	2	0	1	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1A_chr3_42777908_42809490	0/0	t0008	2439	3	0	2	1	0	0	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1A_chr3_42777908_42809490	0/0	t0009	2440	2	0	0	2	0	0	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1A_chr3_42777908_42809490	0/0	t0010	2440	2	0	2	0	0	0	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1A_chr3_42777908_42809490	0/0	t0011	2441	2	1	0	1	0	0	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1A_chr3_42777908_42809490	0/0	t0012	2441	2	0	0	2	0	0	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1A_chr3_42777908_42809490	0/0	t0013	2440	2	1	1	0	0	0	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1A_chr3_42777908_42809490	0/0	t0014	2440	1	0	0	0	0	1	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1A_chr3_42777908_42809490	0/0	t0015	2439	1	1	0	0	0	0	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1A_chr3_42777908_42809490	0/0	t0016	2439	1	0	0	1	0	0	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1A_chr3_42777908_42809490	0/0	t0017	2440	1	1	0	0	0	0	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1A_chr3_42777908_42809490	0/0	t0018	2440	1	0	0	0	0	1	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1A_chr3_42777908_42809490	0/0	t0019	2440	1	1	0	0	0	0	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1A_chr3_42777908_42809490	0/0	t0020	2440	1	0	0	1	0	0	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1A_chr3_42777908_42809490	0/0	t0021	2440	1	0	0	1	0	0	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1A_chr3_42777908_42809490	0/0	t0022	2439	1	1	0	0	0	0	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1B_chr17_44842883_44855476	1/1	t0001	351	412	88	82	182	16	42	copy fasta	HIGD1B	chr17	44842883	44855476
HIGD1B_chr17_44842883_44855476	0/0	t0002	351	4	4	0	0	0	0	copy fasta	HIGD1B	chr17	44842883	44855476
HIGD1C_chr12_50947544_50975607	1/1	t0001	337	253	68	49	102	9	23	copy fasta	HIGD1C	chr12	50947544	50975607
HIGD1C_chr12_50947544_50975607	0/0	t0002	337	77	1	11	52	2	11	copy fasta	HIGD1C	chr12	50947544	50975607
HIGD1C_chr12_50947544_50975607	0/0	t0003	337	43	5	11	18	3	6	copy fasta	HIGD1C	chr12	50947544	50975607
HIGD1C_chr12_50947544_50975607	0/0	t0004	337	4	4	0	0	0	0	copy fasta	HIGD1C	chr12	50947544	50975607
HIGD1C_chr12_50947544_50975607	0/0	t0005	337	1	0	0	1	0	0	copy fasta	HIGD1C	chr12	50947544	50975607
HIGD1C_chr12_50947544_50975607	0/0	t0006	337	1	0	0	1	0	0	copy fasta	HIGD1C	chr12	50947544	50975607
HIGD1C_chr12_50947544_50975607	0/0	t0007	337	1	0	1	0	0	0	copy fasta	HIGD1C	chr12	50947544	50975607
HIGD2A_chr5_176383751_176394761	1/1	t0001	334	414	80	73	200	16	43	copy fasta	HIGD2A	chr5	176383751	176394761
HIGD2A_chr5_176383751_176394761	0/0	t0002	334	18	12	3	0	2	1	copy fasta	HIGD2A	chr5	176383751	176394761
HIGD2A_chr5_176383751_176394761	0/0	t0003	335	4	0	0	4	0	0	copy fasta	HIGD2A	chr5	176383751	176394761
HIGD2A_chr5_176383751_176394761	0/0	t0004	334	3	0	0	3	0	0	copy fasta	HIGD2A	chr5	176383751	176394761
HIGD2A_chr5_176383751_176394761	0/0	t0005	334	1	1	0	0	0	0	copy fasta	HIGD2A	chr5	176383751	176394761
HIGD2A_chr5_176383751_176394761	0/0	t0006	334	1	1	0	0	0	0	copy fasta	HIGD2A	chr5	176383751	176394761
HIGD2A_chr5_176383751_176394761	0/0	t0007	334	1	0	0	1	0	0	copy fasta	HIGD2A	chr5	176383751	176394761
HIGD2B_chr15_72670798_72691182	1/0	t0001	814	299	72	47	152	8	19	copy fasta	HIGD2B	chr15	72670798	72691182
HIGD2B_chr15_72670798_72691182	0/1	t0002	814	125	16	28	47	8	25	copy fasta	HIGD2B	chr15	72670798	72691182
HIGD2B_chr15_72670798_72691182	0/0	t0003	814	5	5	0	0	0	0	copy fasta	HIGD2B	chr15	72670798	72691182
HIGD2B_chr15_72670798_72691182	0/0	t0004	814	3	1	2	0	0	0	copy fasta	HIGD2B	chr15	72670798	72691182
HIGD2B_chr15_72670798_72691182	0/0	t0005	814	2	2	0	0	0	0	copy fasta	HIGD2B	chr15	72670798	72691182
HIGD2B_chr15_72670798_72691182	0/0	t0006	814	1	0	0	1	0	0	copy fasta	HIGD2B	chr15	72670798	72691182
HIGD2B_chr15_72670798_72691182	0/0	t0007	814	1	0	1	0	0	0	copy fasta	HIGD2B	chr15	72670798	72691182
HIKESHI_chr11_86297240_86350943	1/1	t0001	515	274	61	44	126	8	33	copy fasta	HIKESHI	chr11	86297240	86350943
HIKESHI_chr11_86297240_86350943	0/0	t0002	515	88	10	14	44	4	16	copy fasta	HIKESHI	chr11	86297240	86350943