JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HIKESHI_chr11_86297240_86350943	0/0	t0003	515	35	13	6	13	2	1	copy fasta	HIKESHI	chr11	86297240	86350943
HIKESHI_chr11_86297240_86350943	0/0	t0004	515	1	0	0	1	0	0	copy fasta	HIKESHI	chr11	86297240	86350943
HILPDA_chr7_128450878_128463418	0/1	t0001	1172	209	56	30	91	6	25	copy fasta	HILPDA	chr7	128450878	128463418
HILPDA_chr7_128450878_128463418	1/0	t0002	1173	121	13	25	72	4	6	copy fasta	HILPDA	chr7	128450878	128463418
HILPDA_chr7_128450878_128463418	0/0	t0003	1171	47	6	10	18	3	10	copy fasta	HILPDA	chr7	128450878	128463418
HILPDA_chr7_128450878_128463418	0/0	t0004	1185	22	6	10	0	3	3	copy fasta	HILPDA	chr7	128450878	128463418
HILPDA_chr7_128450878_128463418	0/0	t0005	1173	7	6	1	0	0	0	copy fasta	HILPDA	chr7	128450878	128463418
HILPDA_chr7_128450878_128463418	0/0	t0006	1172	5	0	0	5	0	0	copy fasta	HILPDA	chr7	128450878	128463418
HILPDA_chr7_128450878_128463418	0/0	t0007	1171	3	0	0	3	0	0	copy fasta	HILPDA	chr7	128450878	128463418
HILPDA_chr7_128450878_128463418	0/0	t0008	1172	3	3	0	0	0	0	copy fasta	HILPDA	chr7	128450878	128463418
HILPDA_chr7_128450878_128463418	0/0	t0009	1172	2	0	0	2	0	0	copy fasta	HILPDA	chr7	128450878	128463418
HILPDA_chr7_128450878_128463418	0/0	t0010	1185	1	1	0	0	0	0	copy fasta	HILPDA	chr7	128450878	128463418
HILPDA_chr7_128450878_128463418	0/0	t0011	1171	1	0	0	1	0	0	copy fasta	HILPDA	chr7	128450878	128463418
HILPDA_chr7_128450878_128463418	0/0	t0012	1172	1	0	0	1	0	0	copy fasta	HILPDA	chr7	128450878	128463418
HILPDA_chr7_128450878_128463418	0/0	t0013	1172	1	0	0	1	0	0	copy fasta	HILPDA	chr7	128450878	128463418
HILPDA_chr7_128450878_128463418	0/0	t0014	1171	1	1	0	0	0	0	copy fasta	HILPDA	chr7	128450878	128463418
HINFP_chr11_119116580_119141059	0/0	t0001	1631	144	13	16	100	3	12	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	1/1	t0002	1632	113	40	28	28	8	7	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	t0003	1632	65	4	5	38	1	17	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	t0004	1631	17	0	0	17	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	t0005	1632	9	5	2	2	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	t0006	1632	9	7	2	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	t0007	1632	8	8	0	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	t0008	1632	8	8	0	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	t0009	1632	5	4	0	0	0	1	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	t0010	1631	3	0	0	0	0	3	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	t0011	1631	3	0	2	0	0	1	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	t0012	1632	2	0	0	2	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	t0013	1632	2	1	0	1	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	t0014	1635	2	0	1	1	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	t0015	1631	2	2	0	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	t0016	1635	2	0	0	0	0	2	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	t0017	1632	1	1	0	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	t0018	1632	1	0	0	0	1	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	t0019	1632	1	0	0	0	0	1	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	t0020	1632	1	1	0	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	t0021	1632	1	1	0	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	t0022	1632	1	1	0	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	t0023	1632	1	0	0	0	1	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	t0024	1632	1	0	0	1	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	t0025	1631	1	0	0	1	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	t0026	1631	1	0	0	1	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINT1_chr5_131154027_131170256	1/1	t0001	472	400	71	76	195	14	42	copy fasta	HINT1	chr5	131154027	131170256
HINT1_chr5_131154027_131170256	0/0	t0002	472	21	19	2	0	0	0	copy fasta	HINT1	chr5	131154027	131170256
HINT1_chr5_131154027_131170256	0/0	t0003	472	1	0	0	1	0	0	copy fasta	HINT1	chr5	131154027	131170256
HINT1_chr5_131154027_131170256	0/0	t0004	472	1	0	0	1	0	0	copy fasta	HINT1	chr5	131154027	131170256
HINT1_chr5_131154027_131170256	0/0	t0005	472	1	0	0	1	0	0	copy fasta	HINT1	chr5	131154027	131170256
HINT2_chr9_35807960_35820042	1/1	t0001	158	414	88	76	196	12	40	copy fasta	HINT2	chr9	35807960	35820042
HINT2_chr9_35807960_35820042	0/0	t0002	158	5	0	0	5	0	0	copy fasta	HINT2	chr9	35807960	35820042
HINT2_chr9_35807960_35820042	0/0	t0003	158	1	0	0	1	0	0	copy fasta	HINT2	chr9	35807960	35820042