JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HINT3_chr6_125951770_125985244	0/1	t0001	2779	152	33	31	56	12	19	copy fasta	HINT3	chr6	125951770	125985244
HINT3_chr6_125951770_125985244	1/0	t0002	2777	67	22	17	11	5	11	copy fasta	HINT3	chr6	125951770	125985244
HINT3_chr6_125951770_125985244	0/0	t0003	2779	18	18	0	0	0	0	copy fasta	HINT3	chr6	125951770	125985244
HINT3_chr6_125951770_125985244	0/0	t0004	2779	10	9	1	0	0	0	copy fasta	HINT3	chr6	125951770	125985244
HINT3_chr6_125951770_125985244	0/0	t0005	2779	3	3	0	0	0	0	copy fasta	HINT3	chr6	125951770	125985244
HINT3_chr6_125951770_125985244	0/0	t0006	2777	2	0	1	0	1	0	copy fasta	HINT3	chr6	125951770	125985244
HINT3_chr6_125951770_125985244	0/0	t0007	2777	2	0	0	0	0	2	copy fasta	HINT3	chr6	125951770	125985244
HINT3_chr6_125951770_125985244	0/0	t0008	2779	2	2	0	0	0	0	copy fasta	HINT3	chr6	125951770	125985244
HINT3_chr6_125951770_125985244	0/0	t0009	2777	2	1	1	0	0	0	copy fasta	HINT3	chr6	125951770	125985244
HINT3_chr6_125951770_125985244	0/0	t0010	2779	2	0	2	0	0	0	copy fasta	HINT3	chr6	125951770	125985244
HINT3_chr6_125951770_125985244	0/0	t0011	2779	1	1	0	0	0	0	copy fasta	HINT3	chr6	125951770	125985244
HINT3_chr6_125951770_125985244	0/0	t0012	2779	1	1	0	0	0	0	copy fasta	HINT3	chr6	125951770	125985244
HINT3_chr6_125951770_125985244	0/0	t0013	2779	1	0	1	0	0	0	copy fasta	HINT3	chr6	125951770	125985244
HINT3_chr6_125951770_125985244	0/0	t0014	2779	1	0	1	0	0	0	copy fasta	HINT3	chr6	125951770	125985244
HINT3_chr6_125951770_125985244	0/0	t0015	2779	1	1	0	0	0	0	copy fasta	HINT3	chr6	125951770	125985244
HINT3_chr6_125951770_125985244	0/0	t0016	2779	1	0	0	1	0	0	copy fasta	HINT3	chr6	125951770	125985244
HINT3_chr6_125951770_125985244	0/0	t0017	2779	1	1	0	0	0	0	copy fasta	HINT3	chr6	125951770	125985244
HINT3_chr6_125951770_125985244	0/0	t0018	2779	1	0	1	0	0	0	copy fasta	HINT3	chr6	125951770	125985244
HIP1R_chr12_122830457_122867961	0/1	t0001	1299	295	62	69	112	15	36	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	t0002	1299	11	10	1	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	1/0	t0003	1303	8	0	1	0	0	6	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	t0004	1299	8	0	0	8	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	t0005	1299	4	0	0	4	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	t0006	1299	4	3	1	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	t0007	1303	3	3	0	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	t0008	1299	3	0	2	0	1	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	t0009	1299	2	0	0	2	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	t0010	1299	2	0	2	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	t0011	1357	2	0	0	2	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	t0012	1299	1	0	0	0	0	1	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	t0013	1299	1	1	0	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	t0014	1299	1	0	0	1	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	t0015	1299	1	0	0	0	0	1	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	t0016	1299	1	0	0	1	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	t0017	1299	1	1	0	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1_chr7_75528298_75743941	0/1	t0001	4896	110	4	24	55	8	18	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	1/0	t0002	4896	27	4	11	1	1	9	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0003	4897	21	19	2	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0004	4896	20	16	1	0	1	2	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0005	4896	9	4	1	2	1	1	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0006	4895	6	6	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0007	4896	5	1	2	0	1	1	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0008	4896	4	4	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0009	4896	4	0	3	0	1	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0010	4896	4	0	3	1	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0011	4896	3	3	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0012	4896	3	3	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0013	4897	3	2	1	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0014	4896	2	0	1	0	1	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0015	4895	2	2	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941