JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HIP1_chr7_75528298_75743941	0/0	t0016	4896	2	2	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0017	4897	2	2	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0018	4896	2	0	1	0	0	1	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0019	4896	2	2	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0020	4896	2	0	0	2	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0021	4896	2	2	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0022	4897	2	2	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0023	4896	2	2	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0024	4896	2	2	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0025	4895	1	0	0	0	1	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0026	4896	1	1	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0027	4897	1	0	1	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0028	4897	1	1	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0029	4896	1	1	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0030	4896	1	1	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0031	4896	1	0	0	0	1	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0032	4896	1	1	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0033	4896	1	0	0	1	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0034	4896	1	0	0	1	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0035	4896	1	0	0	1	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0036	4896	1	0	1	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	t0037	4896	1	1	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIPK1_chr1_113924324_113982869	0/0	t0001	4569	189	48	34	76	8	23	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	1/1	t0002	4569	78	12	18	27	4	15	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	t0003	4569	60	14	9	32	1	4	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	t0004	4570	12	0	3	9	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	t0005	4569	11	7	2	1	0	1	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	t0006	4569	4	0	0	4	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	t0007	4569	4	0	0	4	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	t0008	4569	4	0	0	4	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	t0009	4569	2	2	0	0	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	t0010	4569	2	2	0	0	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	t0011	4570	2	0	0	2	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	t0012	4569	1	0	0	1	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	t0013	4569	1	0	0	1	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	t0014	4569	1	0	0	0	0	1	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	t0015	4569	1	1	0	0	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	t0016	4569	1	0	0	1	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	t0017	4569	1	1	0	0	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	t0018	4569	1	1	0	0	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	t0019	4569	1	0	0	1	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	t0020	4569	1	0	0	0	1	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	t0021	4569	1	0	0	1	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	t0022	4537	1	0	0	1	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	t0023	4569	1	0	1	0	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	t0024	4569	1	0	1	0	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	t0025	4569	1	0	0	1	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK2_chr7_139556570_139782998	0/0	t0001	11730	9	1	3	4	0	1	copy fasta	HIPK2	chr7	139556570	139782998
HIPK2_chr7_139556570_139782998	0/0	t0002	11733	8	0	4	1	2	1	copy fasta	HIPK2	chr7	139556570	139782998
HIPK2_chr7_139556570_139782998	0/0	t0003	11730	5	2	2	1	0	0	copy fasta	HIPK2	chr7	139556570	139782998