JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HIPK2_chr7_139556570_139782998	1/0	t0104	11733	1	0	0	0	0	0	copy fasta	HIPK2	chr7	139556570	139782998
HIPK2_chr7_139556570_139782998	0/1	t0105	11732	1	0	0	0	0	0	copy fasta	HIPK2	chr7	139556570	139782998
HIPK2_chr7_139556570_139782998	0/0	t0106	11733	1	0	0	1	0	0	copy fasta	HIPK2	chr7	139556570	139782998
HIPK2_chr7_139556570_139782998	0/0	t0107	11733	1	0	0	0	1	0	copy fasta	HIPK2	chr7	139556570	139782998
HIPK2_chr7_139556570_139782998	0/0	t0108	11726	1	1	0	0	0	0	copy fasta	HIPK2	chr7	139556570	139782998
HIPK2_chr7_139556570_139782998	0/0	t0109	11733	1	1	0	0	0	0	copy fasta	HIPK2	chr7	139556570	139782998
HIPK2_chr7_139556570_139782998	0/0	t0110	11734	1	1	0	0	0	0	copy fasta	HIPK2	chr7	139556570	139782998
HIPK2_chr7_139556570_139782998	0/0	t0111	11737	1	1	0	0	0	0	copy fasta	HIPK2	chr7	139556570	139782998
HIPK3_chr11_33252381_33362023	0/0	t0001	3968	103	12	22	57	2	10	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	1/0	t0002	3967	94	24	11	47	4	7	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/1	t0003	3968	80	12	15	39	7	6	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	t0004	3967	26	22	2	1	1	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	t0005	3968	7	0	4	2	1	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	t0006	3970	4	4	0	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	t0007	3967	3	0	0	3	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	t0008	3967	3	2	1	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	t0009	3967	3	3	0	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	t0010	3967	3	0	1	0	0	2	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	t0011	3968	1	0	1	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	t0012	3980	1	0	0	1	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	t0013	3970	1	1	0	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	t0014	3967	1	1	0	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	t0015	3967	1	1	0	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	t0016	3967	1	0	0	0	1	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	t0017	3967	1	0	0	1	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	t0018	3967	1	1	0	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	t0019	3967	1	0	0	0	0	1	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	t0020	3968	1	0	0	1	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	t0021	3967	1	0	0	1	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	t0022	3968	1	0	1	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	t0023	3968	1	0	1	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	t0024	3967	1	0	1	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	t0025	3967	1	0	0	1	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	t0026	3971	1	1	0	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK4_chr19_40374271_40395181	1/1	t0001	596	373	99	63	151	18	40	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	t0002	596	7	0	7	0	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	t0003	596	1	0	0	1	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	t0004	596	1	1	0	0	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIRA_chr22_19325698_19436733	0/1	t0001	1000	271	64	54	125	7	20	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	t0002	1001	29	4	1	23	0	1	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	t0003	1003	26	7	9	9	1	0	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	t0004	1000	20	0	0	18	0	2	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	t0005	1000	9	0	2	2	0	5	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	t0006	1000	6	5	1	0	0	0	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	t0007	1000	1	0	0	1	0	0	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	t0008	1000	1	0	1	0	0	0	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	1/0	t0009	1000	1	0	0	0	0	0	copy fasta	HIRA	chr22	19325698	19436733
HIRIP3_chr16_29987330_30000617	1/0	t0001	890	203	41	39	98	6	18	copy fasta	HIRIP3	chr16	29987330	30000617
HIRIP3_chr16_29987330_30000617	0/1	t0002	892	141	42	20	54	8	16	copy fasta	HIRIP3	chr16	29987330	30000617
HIRIP3_chr16_29987330_30000617	0/0	t0003	892	2	0	1	0	0	1	copy fasta	HIRIP3	chr16	29987330	30000617