JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HIRIP3_chr16_29987330_30000617	0/0	t0004	890	2	2	0	0	0	0	copy fasta	HIRIP3	chr16	29987330	30000617
HIRIP3_chr16_29987330_30000617	0/0	t0005	890	1	1	0	0	0	0	copy fasta	HIRIP3	chr16	29987330	30000617
HIRIP3_chr16_29987330_30000617	0/0	t0006	892	1	0	0	0	0	1	copy fasta	HIRIP3	chr16	29987330	30000617
HIVEP1_chr6_12007312_12169999	1/1	t0001	897	331	81	64	134	12	38	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	t0002	900	5	0	0	5	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	t0003	897	3	3	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	t0004	897	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	t0005	897	1	0	0	1	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	t0006	897	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	t0007	897	1	0	1	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	t0008	897	1	0	1	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP2_chr6_142746469_142950176	0/1	t0001	2357	189	38	41	74	9	26	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	1/0	t0002	2357	59	10	20	15	3	10	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	t0003	2357	6	6	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	t0004	2356	6	5	1	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	t0005	2357	5	4	1	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	t0006	2357	4	4	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	t0007	2361	4	0	0	4	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	t0008	2357	3	3	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	t0009	2356	2	2	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	t0010	2357	2	0	2	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	t0011	2357	2	2	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	t0012	2357	2	2	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	t0013	2357	1	1	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	t0014	2357	1	1	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	t0015	2361	1	0	0	1	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	t0016	2357	1	0	1	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP3_chr1_41501365_41923922	0/0	t0001	5388	10	0	5	5	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0002	5388	8	1	0	3	0	4	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0003	5397	4	4	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0004	5397	4	4	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0005	5397	4	4	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0006	5398	4	2	2	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0007	5388	4	0	4	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0008	5387	3	1	1	1	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0009	5396	3	2	1	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0010	5397	3	2	1	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0011	5385	3	0	1	2	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0012	5388	3	0	1	0	1	1	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0013	5389	2	0	0	2	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0014	5399	2	2	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0015	5398	2	2	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0016	5387	2	2	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0017	5396	2	0	0	2	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0018	5386	2	0	0	2	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0019	5398	2	2	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0020	5387	1	0	0	0	0	1	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0021	5399	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0022	5394	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0023	5394	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922